PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG005220.2
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 714aa    MW: 80943.6 Da    PI: 6.8077
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG005220.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.0011450472323
                  ET..TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                  C+   Cgk+F +   L++H   H
  CCG005220.2 450 CSfeGCGKTFIDAGALRKHSHIH 472
                  77779**************7766 PP
2zf-C2H2218.5e-07477501123
                  EEET..TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                  y+C+   Cgk Fs   nL++H++tH
  CCG005220.2 477 YVCHydGCGKAFSLDFNLRSHMKTH 501
                  9***********************9 PP
3zf-C2H214.20.00013507531123
                  EEET..TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                  + Cp   Cgk++ + + Lk+Hi +H
  CCG005220.2 507 HICPysECGKRYAHEYKLKNHIASH 531
                  68*********************96 PP
4zf-C2H2120.00067570595123
                  EEET..TTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                  y Cp   C k + + + Lk H+r+ H
  CCG005220.2 570 YICPyeGCEKDYIHEYKLKLHLRReH 595
                  89*********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF561122.73E-614294IPR011009Protein kinase-like domain
Gene3DG3DSA:2.60.120.2001.8E-5429IPR013320Concanavalin A-like lectin/glucanase domain
SMARTSM002207.6E-2016302IPR000719Protein kinase domain
PROSITE profilePS5001133.09316303IPR000719Protein kinase domain
PfamPF000691.2E-3919294IPR000719Protein kinase domain
PROSITE patternPS0010702245IPR017441Protein kinase, ATP binding site
Gene3DG3DSA:3.30.200.201.1E-1330105No hitNo description
Gene3DG3DSA:1.10.510.109.5E-33106294No hitNo description
PROSITE patternPS001080147159IPR008271Serine/threonine-protein kinase, active site
Gene3DG3DSA:3.30.160.601.5E-13443473IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.783448477IPR007087Zinc finger, C2H2
SMARTSM003550.0037448472IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.03E-8450501No hitNo description
PROSITE patternPS000280450472IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.3E-13474500IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.778477506IPR007087Zinc finger, C2H2
SMARTSM003555.9E-4477501IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280479501IPR007087Zinc finger, C2H2
SuperFamilySSF576678.79E-9487536No hitNo description
Gene3DG3DSA:3.30.160.601.7E-7501533IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.949507536IPR007087Zinc finger, C2H2
SMARTSM003550.035507531IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280509532IPR007087Zinc finger, C2H2
SuperFamilySSF576675.68E-5565593No hitNo description
Gene3DG3DSA:3.30.160.601.1E-8568593IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.016570595IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.349570600IPR007087Zinc finger, C2H2
PROSITE patternPS000280572595IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0003676Molecular Functionnucleic acid binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MVELDYKELV KATGSFSPSR LLGKGSHGSV YKGTLEENKL VAIKKSSVGS DHVSIDNSKK  60
LENEICVLSS LRESPYVINF LGTSHDDDHY STFKEKNRLL VMEYMPCGSL HDLLHVDATP  120
PSWPKRVEIA IQIARAIQFL HEGKPLVIHR DIKSANVLFD LNWKAKLADF GLAVLRVDSS  180
SSPDHETQPA GTIGYLDPCY TTPSKLSTKN DVFSYGVVLL EIVSCQKAID VSRRPASIVD  240
WAVPLIEKQR LMEICDARIA LPTFMEGTIK HLLYVASRCV SCKEENRPSI SEIVMGMDKN  300
CLVGRVKIPS WTSLMRSVML MRRPRKFLKQ WQEEKCDNLH MNNQPAAQVV QAEDCQKLVR  360
EAYSNKEFIV TKGPPRLRVF GIFALYKMGL ADNFHGYRLR VPQDVVATGG RCSLFKWVTE  420
NQLNALREKA KEPPAPEPEP EPTTEVLFLC SFEGCGKTFI DAGALRKHSH IHGERQYVCH  480
YDGCGKAFSL DFNLRSHMKT HSQENYHICP YSECGKRYAH EYKLKNHIAS HHEKNPTPEV  540
VKYATPPERI PKNAKTPPGI YGSASSDRPY ICPYEGCEKD YIHEYKLKLH LRREHPGHMA  600
DENAENATPN ADNEMDEASD QDAYSGKRVN GKSQKHSRSK PNLKMPPVKI RQRKGSSPSP  660
AALNVVKKPW TFKDETYEEE EDSEETEEED RDNAEDGWRY GGNEDDDEET EDED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_A5e-42429974368Probable serine/threonine-protein kinase PBL2
6j5t_D5e-42429974368Probable serine/threonine-protein kinase PBL2
6j5t_I5e-42429974368Probable serine/threonine-protein kinase PBL2
6j5t_J5e-42429974368Probable serine/threonine-protein kinase PBL2
6j5t_M5e-42429974368Probable serine/threonine-protein kinase PBL2
6j5u_C5e-42429974368Probable serine/threonine-protein kinase PBL2
6j5v_C5e-42429974368Probable serine/threonine-protein kinase PBL2
6j6i_A5e-42429974368Probable serine/threonine-protein kinase PBL2
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1485070.0EF148507.1 Populus trichocarpa x Populus deltoides clone WS0131_N16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1R3HY780.0A0A1R3HY78_COCAP; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-109C2H2 family protein