PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG005215.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 118aa    MW: 13396.4 Da    PI: 6.9441
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG005215.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.54.9e-13686383
                 EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
           B3  3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFk 83
                 ++++++d  ++g l++p   +     ++ +s+ + + d +g++W + +++ r+ s +++l+ GW +Fv++ gL++ D v+++
  CCG005215.1  6 SKFLTADDIENG-LSIPGCSLGPLPFQEGQSMNMHVHDGNGQEWIFSCTIkRNESMGHFLSVGWIKFVRERGLRVDDKVTIH 86
                 566688888888.99999888777888999******************885666666***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-11488IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-9486IPR015300DNA-binding pseudobarrel domain
CDDcd100179.01E-10586No hitNo description
PfamPF023625.3E-11686IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MALVFSKFLT ADDIENGLSI PGCSLGPLPF QEGQSMNMHV HDGNGQEWIF SCTIKRNESM  60
GHFLSVGWIK FVRERGLRVD DKVTIHEEAM KNQATGTWIK MEVKRKIRLF GEDVWAAV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002451.18e-66PREDICTED: uncharacterized protein LOC105109425
TrEMBLU7DUM12e-77U7DUM1_POPTR; Uncharacterized protein
STRINGPOPTR_0601s00200.13e-78(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13182519
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25730.12e-07ethylene response DNA binding factor 3