PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG005142.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 279aa    MW: 31915.6 Da    PI: 9.7433
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG005142.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.17.5e-14147249194
                  EEEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-SS.S CS
           B3   1 ffkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldgr.s 88 
                  f+k+lt sd     +rl++ k  a+++       +++ +e++ +t +d++g+++e+ ++++ ++  +vlt+GWk F ++++L+ + Dfv++ + +r +
  CCG005142.1 147 FEKQLTESDLRDDqSRLSINKADAQKYlypllneDENLAEGINVTTYDPNGKEFEMVFKIWVSK-IHVLTGGWKAFFHEHQLRkDQDFVTLWMFRRlD 243
                  89***99998776699***************98866667999****************999997.789**************9899***998777766 PP

                  EE..EE CS
           B3  89 efelvv 94 
                  +++l++
  CCG005142.1 244 TEKLCF 249
                  666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023624.3E-10147251IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.3E-16147250IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-15147251IPR015300DNA-binding pseudobarrel domain
CDDcd100171.89E-17147251No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MEKEDTKLMT LEKMDKDGYP EELREQGAAA LLLSCLLHTR LSCKTALALD KLKSNILGGG  60
KRNQNSHSSR RRPRVSPTQN LGATVRRNHF AGQQGEDSSN AAARNLPGEP PIRSLEIALK  120
LIENYNPHEV PLISGLNGII GRCSKPFEKQ LTESDLRDDQ SRLSINKADA QKYLYPLLNE  180
DENLAEGINV TTYDPNGKEF EMVFKIWVSK IHVLTGGWKA FFHEHQLRKD QDFVTLWMFR  240
RLDTEKLCFV INWRRLPGVT TPIKRKRVRM NKSMDQLTC
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2798630.0GU279863.1 Populus balsamifera isolate INU03 haplotype B hypothetical protein gene, partial sequence.
GenBankGU2798700.0GU279870.1 Populus balsamifera isolate FBK13 haplotype A hypothetical protein gene, partial sequence.
GenBankGU2798720.0GU279872.1 Populus balsamifera isolate FRE01 haplotype A hypothetical protein gene, partial sequence.
GenBankGU2798740.0GU279874.1 Populus balsamifera isolate RNA13 haplotype A hypothetical protein gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011043835.10.0PREDICTED: uncharacterized protein LOC105139172
TrEMBLB9N1E30.0B9N1E3_POPTR; Uncharacterized protein
STRINGPOPTR_0001s40760.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41481936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.11e-28B3 family protein