PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG005105.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

M-type_MADS

Protein Properties

Length: 189aa MW: 21656.4 Da PI: 6.7287

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG005105.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	59.4	4.3e-19	2	48	1	47
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 krien+ r++tfskRr gi KKA+EL +L+ ae+a+ +fs+ gk + CCG005105.1 2 KRIENQDDRSITFSKRRSGIYKKASELATLTRAEIAIAVFSPAGKPF 48 79*****************************************9855 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	2.09E-21	1	65	IPR002100	Transcription factor, MADS-box
SMART	SM00432	7.5E-18	1	53	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	21.124	1	54	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.1E-21	3	50	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.7E-8	16	31	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.7E-8	31	52	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MKRIENQDDR SITFSKRRSG IYKKASELAT LTRAEIAIAV FSPAGKPFSF GHPSVESVIN 60 RFLEDPLDMD STHHLVEAHR RMRIEDLTQK RNDMQHHLDE NKEKGLKLKS KIKEMDSKGW 120 WDTAIDELNI QELIELEKRF KELQMTLCNK IAENTSTVAS SPQAPEIGHS FASTIVNDQN 180 DPGFPDKNH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011043843.1	1e-140	PREDICTED: agamous-like MADS-box protein AGL62
TrEMBL	B9GII0	1e-127	B9GII0_POPTR; Uncharacterized protein
STRING	POPTR_0001s25850.1	1e-128	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF128	33	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	1e-28	AGAMOUS-like 61