PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG005038.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 325aa    MW: 35885 Da    PI: 8.3801
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG005038.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.1e-05226248223
                  EETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                  +Cp Cg++Fs+  nL  H ++ H
  CCG005038.1 226 ECPQCGTRFSSVTNLIDHVQKvH 248
                  5******************9988 PP
2zf-C2H216.52.5e-05264286223
                  EETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                  +Cp+C+k F+++  L+ H  + H
  CCG005038.1 264 VCPKCSKGFRDPVALVEHVERdH 286
                  6*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183102.09E-13649No hitNo description
PROSITE profilePS510397.9011056IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.9E-111153IPR000058Zinc finger, AN1-type
PfamPF014281.9E-131351IPR000058Zinc finger, AN1-type
SMARTSM001542.2E-51352IPR000058Zinc finger, AN1-type
SuperFamilySSF1183101.41E-886142No hitNo description
Gene3DG3DSA:4.10.1110.105.6E-1191150IPR000058Zinc finger, AN1-type
PROSITE profilePS510397.99398151IPR000058Zinc finger, AN1-type
PfamPF014281.9E-8101141IPR000058Zinc finger, AN1-type
SMARTSM001540.019101142IPR000058Zinc finger, AN1-type
PROSITE profilePS501579.723225248IPR007087Zinc finger, C2H2
SMARTSM003550.0086225248IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.36E-5225282No hitNo description
PfamPF138941.9E-4226248No hitNo description
Gene3DG3DSA:3.30.160.605.8E-4226249IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280227248IPR007087Zinc finger, C2H2
SMARTSM003550.11263286IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280265286IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MGTPQFPDLG KHCSVEDCKQ IDFLPFTCDR CRQVFCLEHR SYIKHSCPKA DSNGVIVVIC  60
PLCAKGVRLN PDEDPNISWE VHVNTDCDPS NYDKVTKKRK CPVRGCRELL TFSNTIKCRD  120
CTLDHCLKHR FGPDHNCPGP KKPDVSFPFM GLLNRSKKEE SKPNRATAVS SSKWTTNFLS  180
AASTVRASAE ASMAKLSSEI SQVWQTATNS ASPSSSNGSG GIGPEECPQC GTRFSSVTNL  240
IDHVQKVHEK GGNQSRVLQL PMEVCPKCSK GFRDPVALVE HVERDHRAGN KMAADCQVWE  300
LSGTRYRAGK VVGPDVLLLL VLKMH
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011048038.10.0PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
SwissprotQ8VZ421e-122SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLB9H9V60.0B9H9V6_POPTR; Uncharacterized protein
STRINGPOPTR_0006s05070.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58643351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-122C2H2 family protein