PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG004953.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

LBD

Protein Properties

Length: 244aa MW: 26718.2 Da PI: 7.987

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG004953.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	97.4	1.5e-30	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C+++C+++p++ p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +PvyG++g+++++++ +q++++ CCG004953.1 4 SCNGCRVLRKGCSDNCTIRPCLqwiktPDSQANATLFLAKFYGRAGLVNLIEAGPPKLRPAIFRSLLYEACGRIVNPVYGSAGMLWSGNWAQCQAAVD 101 6***********************************************************************************************99 PP DUF260 94 lallke 99 ++l ++ CCG004953.1 102 AVLKGS 107 988766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.672	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.2E-24	4	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSDNCT IRPCLQWIKT PDSQANATLF LAKFYGRAGL VNLIEAGPPK 60 LRPAIFRSLL YEACGRIVNP VYGSAGMLWS GNWAQCQAAV DAVLKGSPII SLPSSSEVPA 120 PHLISSLNTY DIRHVSRDHD SPELTKVKNQ ARFKRSVATR PNSQSEPTSR VNPGGWGFEP 180 VRDSCLGHLG NGGSYIKDED SIFSVETVEG SLWSQVEPDR FFKFNGQGDD SDVRLDLTLG 240 LVSE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011013419.1	0.0	PREDICTED: LOB domain-containing protein 42-like
Refseq	XP_011022127.1	0.0	PREDICTED: LOB domain-containing protein 42-like
Swissprot	Q9CA30	7e-73	LBD42_ARATH; LOB domain-containing protein 42
TrEMBL	A0A2K1ZFW6	1e-172	A0A2K1ZFW6_POPTR; Uncharacterized protein
STRING	POPTR_0008s11950.1	1e-173	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1546	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68510.1	3e-75	LOB domain-containing protein 42