PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG004913.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 333aa    MW: 37843.1 Da    PI: 8.5881
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG004913.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-05172191120
                  EEETTTTEEESSHHHHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                  + C++C+k+F+r  n++ H+
  CCG004913.1 172 FACSICSKTFNRYNNMQMHM 191
                  78*****************9 PP
2zf-C2H213.80.00017256278123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C +C+k+F  k + ++H +++
  CCG004913.1 256 FMCRKCSKTFAVKGDWRTHEKNC 278
                  89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.34E-5163195No hitNo description
PfamPF139122.4E-4172191IPR007087Zinc finger, C2H2
SMARTSM003550.17172194IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.45172199IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-5172191IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280174194IPR007087Zinc finger, C2H2
SMARTSM00355190219251IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.88E-6242276No hitNo description
Gene3DG3DSA:3.30.160.609.9E-5252276IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035553256276IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MGLCNYHVED KNLCFQAPNF IEWLKPSSSP SPSSSSSSLS NSSVTHQVQL TNPMSVLRLP  60
SLFPQQQHQQ REAMKETIQC LPLLSRFTEK KALKDGDVEV KESTAGVKEE KEVTVALHIG  120
LPNSGDSEVE TEVFDLKEEI SMKKNFQGYS FNSESRFWIP TPAQILVGPM QFACSICSKT  180
FNRYNNMQMH MWGHGSEFRK GPDSLKGTQP AAMLRLPCYC CAQGCKNNIN HPRAKPLKDF  240
RTLQTHYKRK HGVKPFMCRK CSKTFAVKGD WRTHEKNCGK LWYCTCGSDF KHKRSLKDHI  300
RSFGKGHSPH PSLEGFEEIE KECITGSEDE FAH
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011046282.10.0PREDICTED: zinc finger protein WIP3-like
SwissprotQ9SGD11e-128ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLB9H1R30.0B9H1R3_POPTR; Uncharacterized protein
STRINGPOPTR_0004s19460.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-126WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]