PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG004555.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

TALE

Protein Properties

Length: 679aa MW: 73770.1 Da PI: 6.9433

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG004555.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.3	1.5e-09	378	415	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + CCG004555.1 378 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 415 554459******************************88 PP
2	BELL	126.1	1.4e-40	242	313	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakL+s+l+eV++rY+qy++q+q+vissFe++ag+gsak Yt+lAlk+iS++FrcLkdai++qi CCG004555.1 242 ERQEIQMKKAKLISMLDEVEQRYRQYHHQMQIVISSFEQAAGIGSAKTYTALALKTISKQFRCLKDAITGQI 313 79*********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	8.6E-63	165	311	IPR006563	POX domain
Pfam	PF07526	4.3E-50	171	310	IPR006563	POX domain
PROSITE profile	PS50071	12.195	356	419	IPR001356	Homeobox domain
SMART	SM00389	5.3E-9	359	423	IPR001356	Homeobox domain
CDD	cd00086	2.67E-12	359	420	No hit	No description
SuperFamily	SSF46689	6.84E-17	360	426	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.7E-29	362	426	IPR009057	Homeodomain-like
Pfam	PF05920	2.8E-18	376	415	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 679 aa Download sequence Send to blast
MATYFQGNPE IQAAAASAEG LQTLVLMNPT YVQYSETPPP PHPSNNLVFL NAAASAAANS 60 LSPPPHLSGH APSNTQQFVG IPLDPNSHEA SALHGLIPRV HYNFYNPIDS TSTARETPRA 120 QQGLSLSLSS QQQGGFGSQA QALSGEDIRV SGGLVSAGSG VTNGVPAMQG VLLSSKYLKA 180 TEELLDEVVN VNSNGIKSEL SKKSNGISSN NSNKLIGESS TGEGSGEGEA SGKRGPELST 240 AERQEIQMKK AKLISMLDEV EQRYRQYHHQ MQIVISSFEQ AAGIGSAKTY TALALKTISK 300 QFRCLKDAIT GQIKAANKSL GEEDCLGGKI EGSRLKFVDH HLRQQRALQQ LGMIQHNAWR 360 PQRGLPERSV SVLRAWLFEH FLHPYPKDSD KHMLAKQTGL TRSQVSNWFI NARVRLWKPM 420 VEEMYMEEIK EQEQNGSDDK TSKSEHNEDA ASRSVLQEKG SVNGNQTRSF KSLDNSPDAP 480 SAISIPTSST SPVGGNLRNQ SGFSFMGSSE LDGITQGSPK KPRSHDLIQS PTSVPSINMD 540 IKPGEANNEQ VSMKFGDERQ SRDGYSFMGG QTNFIGGFGQ YPIGEIGRFD GEQFTPRFSG 600 NGVSLTLGLP HCENLSLSGT HQTFLPNQNI QLGRRVEIGE PNEYGALNTS TPHSSTAYES 660 IDIQNRKRYI AQLLPDFVA

Sequence ? help Back to Top

Protein Sequence Length: 679 aa Download sequence Send to blast

MATYFQGNPE IQAAAASAEG LQTLVLMNPT YVQYSETPPP PHPSNNLVFL NAAASAAANS  60
LSPPPHLSGH APSNTQQFVG IPLDPNSHEA SALHGLIPRV HYNFYNPIDS TSTARETPRA  120
QQGLSLSLSS QQQGGFGSQA QALSGEDIRV SGGLVSAGSG VTNGVPAMQG VLLSSKYLKA  180
TEELLDEVVN VNSNGIKSEL SKKSNGISSN NSNKLIGESS TGEGSGEGEA SGKRGPELST  240
AERQEIQMKK AKLISMLDEV EQRYRQYHHQ MQIVISSFEQ AAGIGSAKTY TALALKTISK  300
QFRCLKDAIT GQIKAANKSL GEEDCLGGKI EGSRLKFVDH HLRQQRALQQ LGMIQHNAWR  360
PQRGLPERSV SVLRAWLFEH FLHPYPKDSD KHMLAKQTGL TRSQVSNWFI NARVRLWKPM  420
VEEMYMEEIK EQEQNGSDDK TSKSEHNEDA ASRSVLQEKG SVNGNQTRSF KSLDNSPDAP  480
SAISIPTSST SPVGGNLRNQ SGFSFMGSSE LDGITQGSPK KPRSHDLIQS PTSVPSINMD  540
IKPGEANNEQ VSMKFGDERQ SRDGYSFMGG QTNFIGGFGQ YPIGEIGRFD GEQFTPRFSG  600
NGVSLTLGLP HCENLSLSGT HQTFLPNQNI QLGRRVEIGE PNEYGALNTS TPHSSTAYES  660
IDIQNRKRYI AQLLPDFVA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	4e-16	365	423	5	63	Homeobox protein Meis2
3k2a_B	4e-16	365	423	5	63	Homeobox protein Meis2
4xrs_A	3e-16	365	422	1	58	Homeobox protein Meis1
4xrs_B	3e-16	365	422	1	58	Homeobox protein Meis1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT028867	0.0	CT028867.1 Poplar cDNA sequences.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011046419.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_011046420.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_011046421.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_011046422.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_011046423.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Swissprot	Q9SJ56	0.0	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	A0A2K2A587	0.0	A0A2K2A587_POPTR; Uncharacterized protein
TrEMBL	A0A385JI42	0.0	A0A385JI42_POPTO; BEL1-like homeodomain 1
STRING	POPTR_0006s21950.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1627	34	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-166	BEL1-like homeodomain 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]