PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG004225.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 540aa    MW: 59939.2 Da    PI: 8.687
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG004225.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0015931123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C+ C+ksF +  +L  H++ H
  CCG004225.1  9 HVCKLCKKSFLTGKMLGGHMKIH 31
                 79*******************99 PP
2zf-C2H214.50.000181102223
                  EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                  kC  Cgk F ++ +L+ H+r H
  CCG004225.1  81 KCRVCGKEFGSPKSLHGHMRHH 102
                  7*******************99 PP
3zf-C2H214.30.00012112132323
                  ETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                  C+ Cg+ F +  +L +H+r+H
  CCG004225.1 112 CEECGRGFLSLKSLSNHMRLH 132
                  ********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.43E-6536No hitNo description
PfamPF139126.1E-6831IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.325936IPR007087Zinc finger, C2H2
SMARTSM003550.25931IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.11580107IPR007087Zinc finger, C2H2
SMARTSM003550.02580102IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.52E-981132No hitNo description
PfamPF139121.6E-481104IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.9E-481104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.845110132IPR007087Zinc finger, C2H2
SMARTSM003550.033110132IPR015880Zinc finger, C2H2-like
PfamPF138949.7E-5111133No hitNo description
PROSITE patternPS000280112133IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.7E-5112133IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.3E-5374398IPR007087Zinc finger, C2H2
PROSITE profilePS501579.598374401IPR007087Zinc finger, C2H2
SMARTSM003551.4374396IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.62E-7374396No hitNo description
PROSITE patternPS000280376396IPR007087Zinc finger, C2H2
SuperFamilySSF576673.62E-7451478No hitNo description
PfamPF139121.7E-8456478IPR007087Zinc finger, C2H2
PROSITE profilePS501578.974456483IPR007087Zinc finger, C2H2
SMARTSM003550.62456478IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280458478IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MKKNQEKVHV CKLCKKSFLT GKMLGGHMKI HGARKSIKEY VKFESNNMGS ECHGLREQPK  60
KSWKFSGLNH DGSVSMQETA KCRVCGKEFG SPKSLHGHMR HHSAKERKGV YCEECGRGFL  120
SLKSLSNHMR LHHKKLRVSS SGPNLVVMAL SATETVNLVR RKRSSRMRCK ITPNSSFSRS  180
NESVSGFDIE QEAEEVAITL IMMSRGECNG FDSLCQSKRI KRGEGYHGFD GNGFVRPKKT  240
GEYYLDSCDL DCKISISSGA ANQVRLEVPM ESFHKDVESK SPQLDDESVE FCGNEIEKGG  300
HGELITSCTV AESSLDLMGG VGLDAARLGF QKSIPIKQAS FDASDAEMGQ DARLQMVVTT  360
DSDITESPSK KGNFRCRICN RNFISYQSLG GHQTFHRKSS IGLKTDSCKR DIQAIFSPET  420
KATGKLVKID CIQESVKQET DGVIVKDCES KEGKEHKCPI CFKVFLSGQA LGGHKRAHFP  480
KAREEQNIAV NREVSDICNV FTINVPYTAA PEVSNDVRCE SWWPANSHKH EPLVVGLIAN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9707970.0AB970797.1 Populus nigra PniZF1 mRNA for zinc-finger protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011035855.10.0PREDICTED: uncharacterized protein LOC105133516
TrEMBLA0A2K1X5I10.0A0A2K1X5I1_POPTR; Uncharacterized protein
STRINGPOPTR_0017s12740.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133592027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.18e-16C2H2-like zinc finger protein