PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG004060.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 705aa    MW: 77017.5 Da    PI: 7.3195
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG004060.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.3e-07286306526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C++f++ G C++Gd C +aHg
  CCG004060.1 286 PCPDFRK-GACRRGDMCEYAHG 306
                  8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM002487701040IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.205.4E-1811160IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.6E-1714132IPR020683Ankyrin repeat-containing domain
PfamPF127962.1E-1049124IPR020683Ankyrin repeat-containing domain
SMARTSM002482.3E-45787IPR002110Ankyrin repeat
PROSITE profilePS500888.5235780IPR002110Ankyrin repeat
PROSITE profilePS5029715.9157132IPR020683Ankyrin repeat-containing domain
PRINTSPR014153.6E-55873IPR002110Ankyrin repeat
CDDcd002048.54E-1559132No hitNo description
PROSITE profilePS5008811.35492127IPR002110Ankyrin repeat
SMARTSM002480.001292124IPR002110Ankyrin repeat
PRINTSPR014153.6E-5111125IPR002110Ankyrin repeat
SMARTSM003564.0E-6281307IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-4286308IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-5286306IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582286308IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4314344IPR000571Zinc finger, CCCH-type
SMARTSM0035624316339IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.183316340IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MNCLSVETAD TFSSLLELAA NNDAEGFKRF IKRDASSINE AGFWYVRQKG SKQIVLDQRT  60
PLMVAATYGS LDVLKLILDH TKVDVNLSCG KEKTTALHCA SSGGSINVVD VVKLLLSAGA  120
DPNCLDVNGD RPGDVIVVPP KLQTMKVALE ELLSKTDSDG SFNGSVGVSN LRVSISSSNF  180
SSPTLSSSPE NGSPPSPSVL IYSPRASKFN NLPGSSTPEK KEYPIDPSLP DIKNSIYATD  240
EFRMFSFKVR PCSRAYSHDW TECPFVHPGE NARRRDPRKF HYSCVPCPDF RKGACRRGDM  300
CEYAHGVFEC WLHPAQYRTR LCKDGTSCNR QVCFFAHTPE ELRPLYVSTG SAIPSPRSSQ  360
SAASVMDMAA ALSLLPGSPS SVSAMSPTPF NQPMSPANGI SHSSMAWPQP NVPTLHLPGS  420
NFQSSRLRSS FSARDIPPED FNLLPDFDSQ QQILNDLTCF SQSQNNSASF SRSGWSKTLN  480
PSNLEELFTA EMSSPRFADQ AAAVFSPTHK SAYLNQLQQQ QSMLSPINTS AFSPKNVEHH  540
LLHSAFGAGS PGRMSPRSME PISPRGSRLS TLAQREKQQQ QLRSLSSRDL GSNNPVAHNV  600
NSWSKWGSPN GKLDWSVNGD EVGWLRRSSS FELGNNGEEP DLSWVQSLVK ESPPEVLKEK  660
LAIPVPGAAP SPDVAMGLSS NSQINPVLES WLEQMQIDKK QQPVV
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1451490.0EF145149.1 Populus trichocarpa clone WS01121_A14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011047401.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
RefseqXP_011047402.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
RefseqXP_011047403.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA9PAD30.0A9PAD3_POPTR; Uncharacterized protein
STRINGPOPTR_0001s27370.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]