PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG004015.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 450aa    MW: 51097.9 Da    PI: 6.5518
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG004015.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.9e-17212258148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT++Ed llv+ vkq+G + W+ Ia+++  gR +kqc++rw+++l
      CCG004015.1 212 KGQWTPQEDRLLVQSVKQYGIKKWSQIAKMLE-GRVGKQCRERWHNHL 258
                      799*****************************.*************97 PP
2Myb_DNA-binding58.71.4e-18264306145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++W++eEdell++a+k+ G++ W+ Ia++++ gRt++ +k++w+
      CCG004015.1 264 KDAWSEEEDELLIKAHKEIGNR-WAEIAKRLP-GRTENTIKNHWN 306
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.689207262IPR017930Myb domain
SuperFamilySSF466891.45E-31210305IPR009057Homeodomain-like
SMARTSM007179.3E-16211260IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-27213264IPR009057Homeodomain-like
PfamPF139211.0E-18215272No hitNo description
CDDcd001677.57E-15215258No hitNo description
SMARTSM007171.7E-17263311IPR001005SANT/Myb domain
PROSITE profilePS5129421.822263313IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-22265311IPR009057Homeodomain-like
CDDcd001677.43E-14266309No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010439Biological Processregulation of glucosinolate biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1904095Biological Processnegative regulation of endosperm development
GO:2000692Biological Processnegative regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MKLNTMLRDE FPFLSSLLSE HNFNPEGTND FSLEEAFSSK GLFYNFHHLG YGHPTNIIPP  60
YLDLDHFTTE GSSQNPFSGI SGTCIDLARL DSLASGFSSH DLNAYTPTVV PLLPAGCGDR  120
LLHGLQRGPV RDHDYQKISG ARSLNQKEMK EQRGFEEIGR TRTANNGVST DEVSCGSTED  180
SKHHKQVNHH RKAKKLLLGK DSKVHKKSQV IKGQWTPQED RLLVQSVKQY GIKKWSQIAK  240
MLEGRVGKQC RERWHNHLRP DIKKDAWSEE EDELLIKAHK EIGNRWAEIA KRLPGRTENT  300
IKNHWNATKR RQFSRRESGK DMDSKSTLLQ SYIMMVTSSS STQENNEEEK TEDVNSNSPN  360
QNESPGSSNT DLEIPDGHDH NNDASRLSFD TNLFHDSYGF MSFLQEMPCS YVVDESNMEF  420
EISGLDSLMK GAEVKKEMDL LEMITQGISH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A9e-452093121104MYB PROTO-ONCOGENE PROTEIN
1mse_C7e-452103122104C-Myb DNA-Binding Domain
1msf_C7e-452103122104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00385DAPTransfer from AT3G27785Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011047352.10.0PREDICTED: transcription factor MYB98-like
TrEMBLB9GI430.0B9GI43_POPTR; Uncharacterized protein
STRINGPOPTR_0001s35140.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27785.17e-70myb domain protein 118