PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG003843.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 257aa    MW: 29383.2 Da    PI: 8.119
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG003843.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.13.1e-13174199126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +ktelC+ +++tG C yG+ C+FaHg
  CCG003843.1 174 FKTELCNKWQETGACLYGNHCQFAHG 199
                  79***********************8 PP
2zf-CCCH26.51.1e-08212236125
                  --S---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                  ykte C+  +++G+C+yG rC+F H
  CCG003843.1 212 YKTEVCKMVLAGGICPYGHRCHFRH 236
                  9**********************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.109.2E-18168206IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-11170205IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-7173200IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.793173201IPR000571Zinc finger, CCCH-type
PfamPF006429.8E-10174199IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-9207242IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-12207240IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5211238IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.328211239IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-6212236IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MRHQDLINRS ALCLARLREV TVEMECLRQD NADLRSINRE LNNQLSVLIQ ASLHKHYNDS  60
ARTPFDIDIG FHNLCNISSG GGGGHDMCEE DESPTSVMEA GGDERERISL PKSISVRSNS  120
YSKRNQEQAA SASVTRAITR PRTPTPLNTA KVYVRRDKKQ EEPLELEVYN QGMFKTELCN  180
KWQETGACLY GNHCQFAHGI EELRPVIRHP RYKTEVCKMV LAGGICPYGH RCHFRHALTE  240
QDRFLSHIKP REIKPDR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-21174240470Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011038731.10.0PREDICTED: zinc finger CCCH domain-containing protein 15
SwissprotQ9C9F55e-76C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A3N7GEV20.0A0A3N7GEV2_POPTR; Uncharacterized protein
STRINGPOPTR_0010s12860.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.21e-76C3H family protein