PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG003052.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 308aa    MW: 34270.9 Da    PI: 6.4302
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG003052.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.76.6e-18224258135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C +Cg+ kTp+WR gp g+ktLCnaCG++y++ +l
  CCG003052.1 224 CLHCGAEKTPQWRTGPMGPKTLCNACGVRYKSGRL 258
                  99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169927.7E-7917307IPR016679Transcription factor, GATA, plant
SMARTSM004011.6E-17218268IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.6E-14222256IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.464222254IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-15222281No hitNo description
CDDcd002022.82E-13223270No hitNo description
PROSITE patternPS003440224249IPR000679Zinc finger, GATA-type
PfamPF003201.6E-15224258IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MEGPKFFTGG YNDCGATEFF SEKKSSDQKA DQHFTVEDLL NFPNDDDDDI MAGGFFSDID  60
GIKTTKKNCI TANHSFTNTH SFSSASVEYG QTFADSQFST ELCFLYDDMA ELEWLSNFVD  120
DSFSTDQSLQ TNIHVLSGSK PPTPESSSSE THHPEPITCN PSNPAFQPET PLPGKARSKR  180
SRPAPCDWST RLLHVPSTTK MSSEKQLREN PDPNLDSNAI VRRCLHCGAE KTPQWRTGPM  240
GPKTLCNACG VRYKSGRLVP EYRPAASPTF VSAKHSNSHR KVLELRRQKE MQGAQQHQFL  300
SQSSIFGV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011046757.10.0PREDICTED: GATA transcription factor 9-like
TrEMBLA0A2K2C0071e-133A0A2K2C007_POPTR; Uncharacterized protein
STRINGXP_002515981.11e-127(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.13e-65GATA transcription factor 9