PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG002981.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 679aa    MW: 75080.5 Da    PI: 5.1793
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG002981.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS445.73.1e-1363156782374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar...svselykalppsetseknsseelaalklfsevsPilkfshl 96 
                   +lLl+cAeavs++d  la+++L +l+  +sp gd+mqR+a++fteAL+arla    + ++++++ + s+ +  ns e l++++++++++P++kf+h+
  CCG002981.1 315 LNLLLACAEAVSNEDYMLARRYLHHLNRVVSPLGDSMQRVASCFTEALSARLAAtltTKPSTSSSKAFSPFP-PNSMEILKIYQILYQACPYVKFAHF 411
                  689**************************************************9321222333333333333.4599********************* PP

         GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  taNqaI ea+e+eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvgs    s e+++etg+ L+++A++l+vpfe+++ va++ledl+++++
  CCG002981.1 412 TANQAIFEAFETEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGS----SMENVRETGRCLTELAHSLHVPFEYHP-VAEELEDLKPHMF 504
                  *****************************************************....***************************.7************ PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  + + gEalaVn+v +lhr++    +l     ++  ++++  P++v+vveqea+hn++ Fl rfleal+yysa+fdsl+a++p++s++r+kvE+ ++++
  CCG002981.1 505 NRRVGEALAVNSVNRLHRVP--GNCLG----NLFAMIRDQAPNIVTVVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSSQRAKVEQYIFAP 596
                  *******************9..44444....5****************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ei+n+vacegaer+erhe+lekWr+ +e  GFk vpls +a++q k ll  ++ dgyr+ e++g+l+lgW+dr+++++SaWr
  CCG002981.1 597 EIRNIVACEGAERFERHERLEKWRKLMEGKGFKGVPLSANAVTQSKILLGLYSCDGYRLTEDKGCLLLGWQDRAILAASAWR 678
                  *********************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.493288658IPR005202Transcription factor GRAS
PfamPF035141.1E-133315678IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MINALCGSMG SLKSENSCNK LQPTSPNESS SVTESKKTTQ SFEFEQNSLT PPSLNLPAVK  60
FELDGDVEVQ SPDSSMWESF FTDNFDCDFM ISSPVRNLPS PQTSSYNHNY AHAMQGQSLS  120
GCSPPRYLSQ LGAAFSSIHK GKGQSPLHRM CNSPNNQFMQ VESLSSPGIE DFLDDFQRDG  180
YGEGYQQPPK ISGSSGSSTQ LFDMSTTVPA MLDCLTIQNP SRFCTGSVSE TSSGSLMTQE  240
SDIYQIGSVG IAPSSQQLLQ ENQQQPQPLP LPPTQPQPPP TTQSLQQQPE SFNHTLMVSL  300
PIGSEQEQDS GLQLLNLLLA CAEAVSNEDY MLARRYLHHL NRVVSPLGDS MQRVASCFTE  360
ALSARLAATL TTKPSTSSSK AFSPFPPNSM EILKIYQILY QACPYVKFAH FTANQAIFEA  420
FETEERVHVI DLDILQGYQW PAFMQALAAR PGGAPFLRIT GVGSSMENVR ETGRCLTELA  480
HSLHVPFEYH PVAEELEDLK PHMFNRRVGE ALAVNSVNRL HRVPGNCLGN LFAMIRDQAP  540
NIVTVVEQEA SHNGPYFLGR FLEALHYYSA IFDSLDATFP PDSSQRAKVE QYIFAPEIRN  600
IVACEGAERF ERHERLEKWR KLMEGKGFKG VPLSANAVTQ SKILLGLYSC DGYRLTEDKG  660
CLLLGWQDRA ILAASAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-993026777378Protein SCARECROW
5b3h_A1e-993026776377Protein SCARECROW
5b3h_D1e-993026776377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011045749.10.0PREDICTED: DELLA protein RGL1-like
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLB9GF630.0B9GF63_POPTR; Uncharacterized protein
STRINGPOPTR_0001s33360.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94703243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-93RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]