PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG002814.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ZF-HD
Protein Properties Length: 190aa    MW: 21451.7 Da    PI: 6.9346
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG002814.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer93.61.7e-29961559
  ZF-HD_dimer  5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59
                  YkeCl+NhAaslG++a+DGCgEf+ +  +++++ +l+CaACgCHRnFHR+ + +
  CCG002814.1  9 LYKECLRNHAASLGSYATDGCGEFTLD--DTSSPYSLQCAACGCHRNFHRKVTYS 61
                 7*************************8..5578******************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.2E-24959IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257745.0E-181057IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152323.1481058IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.1E-241057IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.2E-28104169IPR009057Homeodomain-like
SuperFamilySSF466891.42E-16104168IPR009057Homeodomain-like
TIGRFAMsTIGR015651.5E-29110168IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MESDNTNDLY KECLRNHAAS LGSYATDGCG EFTLDDTSSP YSLQCAACGC HRNFHRKVTY  60
SNSSNRRDHI MHPPSSETVV MDMIDYAEGN NERDFRPPVM VVESGDRSGK KRHRTKFTPE  120
QKEKMLGFAE KLGWKLQRKD EEDEVERFCR GIGISRQVFK VWMHNHKNSS SSTSASTGNA  180
SSLTTQEEGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A8e-221101731779ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:17233795}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by abscisic acid and by drought and salt stress. Not induced by cold. {ECO:0000269|PubMed:17233795}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011035531.11e-143PREDICTED: zinc-finger homeodomain protein 4-like
SwissprotQ9SEZ17e-40ZHD11_ARATH; Zinc-finger homeodomain protein 11
TrEMBLA0A2K1XHC61e-132A0A2K1XHC6_POPTR; Uncharacterized protein
STRINGPOPTR_0015s05220.11e-133(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79822844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.16e-42zinc finger homeodomain 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]