PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG002731.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C3H

Protein Properties

Length: 387aa MW: 42464.6 Da PI: 7.1239

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG002731.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.2	1.2e-07	128	148	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f++ G Ck Gd+C FaHg CCG002731.1 128 ACPEFRK-GGCKKGDSCEFAHG 148 7****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.319	123	150	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.0E-5	123	149	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.4E-5	127	150	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.0E-5	128	148	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.042	158	182	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	11	158	181	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MMMIGEHPHH HPNPTVQIPQ WDPYDDQTTS PSPSPSTIPS SPFTNFNALD SLTALHRYLP 60 SNEPDPSFED ELDLPVDAFS CDHFRMYVFK VRRCGRGRSH DWTECPYAHP GEKARRRDPQ 120 RYNYSGTACP EFRKGGCKKG DSCEFAHGVF ECWLHPARYR TQPCKDGPAC RRRVCFFAHT 180 PEQLRVLPQH SPKGNGSGSW ELDFGSVVMH PIDSYLTKAG SFVSSPTSIL TSPPVSPPSD 240 SPPMSPVSPQ VIGGSGSGSF NSMSELLASM RGLQLGKMKI GSPVGSWGVQ SGSRFGSPRG 300 SSLRPGFCSL PSTPTRTMAT RSGLGQLDIW GDSSTCEEEP AMERVESGRD LRAKIYAKLS 360 KENSLDPDRV ETAVSGPDVG WVSELVM

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MMMIGEHPHH HPNPTVQIPQ WDPYDDQTTS PSPSPSTIPS SPFTNFNALD SLTALHRYLP  60
SNEPDPSFED ELDLPVDAFS CDHFRMYVFK VRRCGRGRSH DWTECPYAHP GEKARRRDPQ  120
RYNYSGTACP EFRKGGCKKG DSCEFAHGVF ECWLHPARYR TQPCKDGPAC RRRVCFFAHT  180
PEQLRVLPQH SPKGNGSGSW ELDFGSVVMH PIDSYLTKAG SFVSSPTSIL TSPPVSPPSD  240
SPPMSPVSPQ VIGGSGSGSF NSMSELLASM RGLQLGKMKI GSPVGSWGVQ SGSRFGSPRG  300
SSLRPGFCSL PSTPTRTMAT RSGLGQLDIW GDSSTCEEEP AMERVESGRD LRAKIYAKLS  360
KENSLDPDRV ETAVSGPDVG WVSELVM

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF144742	0.0	EF144742.1 Populus trichocarpa clone WS01117_K24 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011012777.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 20-like
Swissprot	Q9M0G2	1e-118	C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBL	B9ING6	0.0	B9ING6_POPTR; Uncharacterized protein
STRING	POPTR_0018s04720.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2056	31	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19810.1	1e-106	C3H family protein

Publications ? help Back to Top
Dokládal L, et al. cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase. Front Plant Sci, 2015. 6: p. 985 [PMID:26617625] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]