PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG002643.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

LBD

Protein Properties

Length: 272aa MW: 30940.6 Da PI: 5.5307

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG002643.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.1	3.5e-39	10	108	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 aCa+Ck++rrkC+++C+lapyfp +qp+ f+n+hklFG++++lk+l++l+++++e+am+s++y+A++r r Pv+G+ g+i kl+ q++q+++el ++ CCG002643.1 10 ACASCKYQRRKCSSECPLAPYFPPDQPRLFQNTHKLFGVRKILKILENLDPHQHEEAMRSIIYQANIRDRFPVHGCWGIICKLHFQIQQVEEELRAVL 107 7********************************************************************************************99876 PP DUF260 99 e 99 + CCG002643.1 108 A 108 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.661	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.7E-37	10	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MTLKGGTSQA CASCKYQRRK CSSECPLAPY FPPDQPRLFQ NTHKLFGVRK ILKILENLDP 60 HQHEEAMRSI IYQANIRDRF PVHGCWGIIC KLHFQIQQVE EELRAVLAQL EMYRQQQQHQ 120 HQIAALTEDV PSQLELGMAP PQPCLAQQYS YSVIGSNTGY SSNYLYSNDN AGNSLWGQHS 180 YATNYNINSM PIIQSQLAAS QPLATQQEIV QDYDEMHPFF DSIDDRQSYI ETKEPYESSS 240 EESLKDTAPS MEHAAENELK SAAARFSLTS IN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-28	6	113	7	114	LOB family transfactor Ramosa2.1
5ly0_B	1e-28	6	113	7	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011028694.1	0.0	PREDICTED: LOB domain-containing protein 27-like
Swissprot	Q9STS6	5e-59	LBD27_ARATH; LOB domain-containing protein 27
TrEMBL	B9IEH6	0.0	B9IEH6_POPTR; Uncharacterized protein
STRING	POPTR_0015s07780.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4415	29	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	8e-61	LOB domain-containing protein 27

Publications ? help Back to Top
Kim MJ,Kim M,Kim J Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis. Plant Signal Behav, 2015. 10(8): p. e1044193 [PMID:26252070] Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]