PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG002623.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 296aa    MW: 32698.7 Da    PI: 10.0391
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG002623.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.82.4e-1376120347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qk+
      CCG002623.1  76 PWTEEEHRRFLFGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKH 120
                      8******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.52469125IPR017930Myb domain
SMARTSM007172.2E-873123IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.3E-1574123IPR006447Myb domain, plants
SuperFamilySSF466893.36E-1674126IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.8E-1175120IPR009057Homeodomain-like
PfamPF002494.9E-1076120IPR001005SANT/Myb domain
CDDcd001673.36E-876121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MVTGSSSTVS CGEGAAETKP KEIRLFGVRV VVDNFRRNVS LNNVSEYQYY KEMTPNTNND  60
NNNEEEDAGA AVSGVPWTEE EHRRFLFGLQ KVGKGDWRGI SRNFVKTRTP TQVASHAQKH  120
FLRLNNVNRR RRRTSLFDIT ADTVTSLPKE EQQAHRQDSN INNHASPSNP LPPPPLQANS  180
ITNFSGVPSI PIRTRTVNPP VLPLQIENPM MESQSLGQGH QFINHSINLV RPVAVVPAVC  240
TPAMPDLNLN LKPTADSSSL SLKLSSPFVQ RESTSRSSAF QAMSSMKNGD NTIIVA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128133RRRRRT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1459421e-133EF145942.1 Populus trichocarpa clone WS0114_H05 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028664.11e-166PREDICTED: transcription factor MYB1R1-like isoform X1
RefseqXP_011028665.11e-166PREDICTED: transcription factor MYB1R1-like isoform X2
TrEMBLB9IEJ91e-155B9IEJ9_POPTR; MYB-like family protein
STRINGPOPTR_0015s08020.11e-156(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42483154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19000.25e-32MYB_related family protein