PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG002083.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 271aa    MW: 30076.8 Da    PI: 6.8897
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG002083.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.64.4e-08164211455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR +iN+++  L++++P +     k +  a +L + ++Y++sLq
  CCG002083.1 164 SHSLAERVRRGKINERLRCLQDIVPGC----YKTMGMAVMLDEIINYVQSLQ 211
                  8*************************9....35599999**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.80E-10158215No hitNo description
SuperFamilySSF474593.66E-16158227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-15160221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.097160210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-5164211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-8166216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MADFTADLLS FRPPFPFLDI DPSMVALSQF TEVSQAILDN PSVNNIHSFM PFTSDNFFSH  60
QAPEFPGNLA EGFAGIFHQN DQNVMPVSQP LTTPGNESEI QESKKRKAMD VSASSSMNSS  120
PQVSESGSKR RNSSRRGKGV KSNEDGKPKD VVHVRARRGQ ATDSHSLAER VRRGKINERL  180
RCLQDIVPGC YKTMGMAVML DEIINYVQSL QNQVEFLSMK LTAASTFYDF NAETDAIETM  240
QRAKAQEAKE LQRAMREGSG GLAHIHSTWS P
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM2342730.0KM234273.1 UNVERIFIED: Populus alba x Populus glandulosa cultivar Hyeonsasi brassinosteroid sinaling protein-like mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011045850.10.0PREDICTED: transcription factor BEE 1 isoform X2
SwissprotQ8GWK73e-70BEE3_ARATH; Transcription factor BEE 3
TrEMBLA0A2K1Y9C00.0A0A2K1Y9C0_POPTR; Uncharacterized protein
STRINGPOPTR_0012s05210.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33603467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.14e-67BR enhanced expression 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]