PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG001802.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 462aa    MW: 50998.1 Da    PI: 6.861
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG001802.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.82.2e-0986111127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +kt+ C  f   GtC+ G++C+FaHg+
  CCG001802.1  86 FKTRVCAKFKT-GTCRNGENCNFAHGM 111
                  69*******99.*************95 PP
2zf-CCCH26.11.5e-08150173225
                  -S---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                  k++lC+ f+ + +C+yGdrC+F H
  CCG001802.1 150 KMKLCKMFYNGEECPYGDRCNFLH 173
                  789*******66************ PP
3zf-CCCH41.91.6e-13235260126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +kt+lC  +  tG+C++G++C+FaHg
  CCG001802.1 235 WKTKLCTKWEMTGQCPFGEKCHFAHG 260
                  8************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.0E-1481118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-883116IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-685111IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.25385112IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-786111IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-7147175IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.145148176IPR000571Zinc finger, CCCH-type
SMARTSM003560.0011148175IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-6150173IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-9150174IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-16229266IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-10233265IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-7234261IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.544234262IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-10235260IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.90.1300.105.1E-9300426IPR023631Amidase signature domain
SuperFamilySSF753049.81E-6343425IPR023631Amidase signature domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MSYPDSPVSF MASQASYQSG SDAVDVWPQF VMNNNEQFEQ QQQHHHHQPP YKRPRSSEDN  60
SHQFMSSRVP PSNSLPVHKG TTNIFFKTRV CAKFKTGTCR NGENCNFAHG MQDLRQPPPN  120
WKELVSVGVS NEEDRSTAIN REDDLRIIHK MKLCKMFYNG EECPYGDRCN FLHEDPANFR  180
EDAGRFRESS AISIGTTGHL MGQGSGVFNA AEVNRPANTA VSDAPRSNLI KPVYWKTKLC  240
TKWEMTGQCP FGEKCHFAHG LAELQVPGGR NEVEAGNAGS TVTNSPTPVL PNNTSPSMTV  300
NVPSLVEEKG TKCLLKWKGQ KKINRIYADW LDDLSLVHTS TNQGQEAELA ALSNLSKLTR  360
HGFQKLVSDN KLDALVTPSA SVALLANGGF PGINVPSGYD DMGVPFGIKG TEPQLIQIAS  420
GFEQCLTRWS FCSDESTGPQ AITRTGLFDG YRTAADSDCI WL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011037281.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like isoform X2
RefseqXP_011037282.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like isoform X3
SwissprotQ9LT814e-90C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A3N7EY470.0A0A3N7EY47_POPTR; Uncharacterized protein
STRINGPOPTR_0009s13310.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83333345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.13e-92C3H family protein