PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG001493.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 566aa    MW: 61608.5 Da    PI: 6.1157
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG001493.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.5e-09374421455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  CCG001493.1 374 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 421
                  8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.84E-17368439IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.87E-11368425No hitNo description
Gene3DG3DSA:4.10.280.103.1E-17370439IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663370420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.7E-6374421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-10376426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MEKDKLFMSE GANTAATIWN SCSFGMEMQT DELNCGSGQL ANCFLNPNWD NLLDQSDPFE  60
SALSSIVSSP VASSANASVI SNAGVGGDSV LIRELIGRLG NICNSGEMSP QSYINNNNNS  120
TNTSCYSTPL NSPPKLSISS QMRGNLPILG NSLVNHPSLA PFPADPGFVE RAARYSCFGS  180
NNLGGLNGQF GLNESELINR MMPRVEPGKL SRVSSNNSMK VAGSQANVQE SNKSSPQDGN  240
LNSDKKFSRL SRPSTPENGD SREESSLSEQ IPGGELSMKS QNDANSRKRK SIPRGKAKET  300
PSPSVSDVKV AAGNDESSAK KSKSEETYGS DKDSAKAMEE ENGNQKQKKN NSNPPEPPKD  360
YIHVRARRGQ ATDSHSLAER VRREKISERM KFLQDLVPGC NKVTGKAVML DEIINYVQSL  420
QRQVEFLSMK LATVNPKMEI NMETFLSKEI FQSRGSMPHG LYPLDSSTPA FPYGYQSQQG  480
LALQDGMSRN AESQFSMNPL NAALRRSSSM QLPALDGFAD ASHQASAMWQ DDLQSVVQMG  540
YGQNQQQDFQ GSVPPTQMKI ELSFNQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1285290SRKRKS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011042744.10.0PREDICTED: transcription factor bHLH77-like
TrEMBLA0A2K2BND60.0A0A2K2BND6_POPTR; BHLH family protein
STRINGPOPTR_0002s23650.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23690.13e-67bHLH family protein