PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CCG001486.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 251aa MW: 26354.2 Da PI: 8.6749 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.7 | 0.00018 | 79 | 101 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k Fs+ L H +H CCG001486.1 79 YKCSVCNKAFSSYQALGGHKASH 101 9***********99999998887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.0067 | 79 | 101 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.741 | 79 | 106 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.15E-10 | 79 | 154 | No hit | No description |
Pfam | PF13912 | 3.9E-13 | 79 | 103 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.1E-4 | 79 | 101 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 81 | 101 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.6E-11 | 131 | 156 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.7 | 132 | 154 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.245 | 132 | 154 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 134 | 154 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 251 aa Download sequence Send to blast |
MALEALNSPT TAAPFNYEET WIKRKRSKRP RSESPSTEEE YLALCLIMLA RGGSTAATAK 60 KTASASPAPP QPPTSDLSYK CSVCNKAFSS YQALGGHKAS HRKSSSESTV ASATENPSTS 120 TTTTTTTSGR THECSICHKT FLTGQALGGH KRCHYEGTIG GNNSSSASAA ITTSDGGAVG 180 GGGVSQSKSQ RSGGGFDFDL NLPALPEFEG PRISKPEPCG DQEVESPLPG KKPRLMFSLK 240 QERTDMGSSQ I |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EF145317 | 0.0 | EF145317.1 Populus trichocarpa clone WS01123_D03. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011012430.1 | 0.0 | PREDICTED: zinc finger protein ZAT10 | ||||
TrEMBL | A0A2K2C5R1 | 1e-143 | A0A2K2C5R1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s30260.1 | 1e-143 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1327 | 32 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G27730.1 | 1e-33 | salt tolerance zinc finger |