PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG001458.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HSF
Protein Properties Length: 228aa    MW: 26500.1 Da    PI: 7.9265
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG001458.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.16.9e-34191102102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y ++ed++++e+isw+++g+ fvv+++ efa+++Lp+ Fkhsnf+SF RQLn+YgF+kv +++         weF ++ F+kg++ell++i+
   CCG001458.1  19 FLLKTYMLVEDPATDEVISWNDEGTGFVVWQPAEFARDLLPTLFKHSNFSSFFRQLNTYGFRKVATSR---------WEFCNDMFRKGERELLCQIR 106
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
   CCG001458.1 107 RRKA 110
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.29E-3215108IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.9E-3615108IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.7E-5315108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-181942IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.5E-3019108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-185769IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-187082IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MANDKGLLEY VRKSTPPPFL LKTYMLVEDP ATDEVISWND EGTGFVVWQP AEFARDLLPT  60
LFKHSNFSSF FRQLNTYGFR KVATSRWEFC NDMFRKGERE LLCQIRRRKA WSSKQQPIAP  120
IQVTTQELEE DQRSSSTSSS SEYTTLVDEN KRLKKENGVL STELTSMKRK CKELLDLVAK  180
YAHLEKEEED ERPKLFGVRL EAEGDRERKR KRAEISESAS ILLSQSCI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-201410815120Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2175870.0AC217587.1 Populus trichocarpa clone POP031-F05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011033345.11e-168PREDICTED: heat stress transcription factor B-3-like
SwissprotO222306e-75HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLB9II851e-164B9II85_POPTR; Uncharacterized protein
STRINGPOPTR_0016s05680.11e-165(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.11e-72heat shock transcription factor B3