PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG001437.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 732aa    MW: 79868.7 Da    PI: 6.4086
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG001437.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.7e-08308328526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C++f++ G C++Gd C +aHg
  CCG001437.1 308 PCPDFRK-GACRRGDLCEYAHG 328
                  8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.02E-1541166IPR020683Ankyrin repeat-containing domain
PfamPF127963.5E-982156IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.1E-1686167IPR020683Ankyrin repeat-containing domain
CDDcd002043.77E-1386165No hitNo description
SMARTSM002480.00487117IPR002110Ankyrin repeat
PROSITE profilePS5029715.11487195IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.514122157IPR002110Ankyrin repeat
SMARTSM002485.8E-4122154IPR002110Ankyrin repeat
SMARTSM003561.2E-5303329IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.169308330IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.1E-4308330IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-5308328IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-4336366IPR000571Zinc finger, CCCH-type
SMARTSM0035633338361IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    Send to blast
MFCRLERLKL AVTPTPPTIY FDKSRPSNMD MNHLTIKTED AFASLLELAA NNDVEGFKKY  60
IECDPSCVDE IGLWYGRQKG SKQMVNDLRT PLMVAATYGS IDVIKVILSL SDVDVNRSCG  120
ADKSTALHCA ASGGAVNAVD VVNLLLAAGA DCNLVDANDH RPIDVIIVPP KLQDARSILE  180
EFLAADGSLV EHKHNLRVSI ATTNSNSPPL SPSQENGSPL SGSDSPMKSK LYEAPVSFVS  240
EKKEYPVDPS LPDIKNSIYS TDEFRMYSFK VRPCSRAYSH DWTECPFVHP GENARRRDPR  300
KFHYSCVPCP DFRKGACRRG DLCEYAHGVF ECWLHPAQYR TRLCKDGTNC ARRVCFFAHT  360
VEELRPLYVS TGSAVPSPRS GTSGAAAMDF ASAMNLLPGS PSAASIMSPS SFTPPMSPSG  420
NGMSHSSLAW PQPNVPALLL PGSNMQSSRL RSSLNARDIP ADYSFLPEFD VQQQQLLSEL  480
SSLTQTSLSN NSLNRSGRLK TLTPSNLDDY FSAESSSPRH ADQALASAVF SPTHNSAFLN  540
QFQQQQSMLS PINTNFSPKN VDHPLLQASF ASGRMSPRSV ESISPMSSRA SMLAQREKQL  600
QQLRSLSSRE LGSNAAAIVG SPVNTWSKWG SSNGKPDWTV STDELGKLRR SNSFELGNGD  660
EPDLSWVQSL VKESPTEMKE KLTMPVSGSV AASASSSESS NLNSQIEPID LDHVVGSWVD  720
LLQIDQLVAQ QN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011033310.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLB9II600.0B9II60_POPTR; Uncharacterized protein
STRINGPOPTR_0016s05410.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]