PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG001269.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TALE
Protein Properties Length: 732aa    MW: 79685.7 Da    PI: 7.9909
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG001269.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.21.6e-094264631954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  CCG001269.1 426 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 463
                  554459******************************88 PP
2BELL120.38.5e-39291361272
         BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  rqelq+kkakL+++l+eVd+rY+qy++q+q+v+ssFe++ag+g+ak+Yt+lAl++iSr+Fr+Lkd ia+qi
  CCG001269.1 291 RQELQMKKAKLVTMLDEVDQRYRQYHHQMQVVVSSFEQAAGYGAAKSYTALALQTISRQFRSLKDTIASQI 361
                  89********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005747.8E-61214359IPR006563POX domain
PfamPF075264.8E-48219358IPR006563POX domain
PROSITE profilePS5007112.131404467IPR001356Homeobox domain
SMARTSM003892.3E-9407471IPR001356Homeobox domain
CDDcd000861.06E-12407468No hitNo description
SuperFamilySSF466898.13E-17408473IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.6E-29410473IPR009057Homeodomain-like
PfamPF059203.1E-18424463IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    Send to blast
MATYFHGSSE IQAAAAPSDG IQTLYLMNPN YLSSYSDATQ QQHQQQSPNM IFFNHSNTVN  60
NSLSHGPPQN HHFVGIPLPV PSSNITSSAP ENHSRPSSLH GVVPSVHYNI WGSIDQNSVA  120
SAATASESSG AHDVMSSQVG FRRPVVVSPG RQGLSLSLSS QQAPAPPTPY SRAISNEHEI  180
QALHPHVSVV SSGDEIRVSG NSPSSVSAVS NGVSGMQNMV LGSKYLRAAQ ELLDEVANVG  240
KDLIKSGIIA RTKEKMKMTK ESMTGDGSDG SGEAVGETSA KRGADLTTAH RQELQMKKAK  300
LVTMLDEVDQ RYRQYHHQMQ VVVSSFEQAA GYGAAKSYTA LALQTISRQF RSLKDTIASQ  360
IRATSKSLGE EDCIGAKVEG SRLRYVDHQL RQQRALQQLG IVQHNAWRPQ RGLPERAVSV  420
LRAWLFEHFL HPYPKDSDKH MLAKQTGLTR SQVSNWFINA RVRLWKPMVE EMYLEEIKER  480
EKDGSEDSGG KNEKKDSGSH SSAPGESSTH HMDQLKGVVL QSKQPEKPTN QNGSPTRFSN  540
PTISMSPMGA SFQQQAGFTL IGQAEMEGIA QSSKKPRSGD MQNSPSSILS MDMDVKHGET  600
SREIGVNFGG ERLTKDGYPL ITGSNGSFGA YPMGDLGRFN IEQLTPRFSG NSVSLTLGLP  660
HCENLSLSGT QQNYLSSQNI QLGGRRIEIG TSEPDFSGIN TSQNSHSSSG FESVDIQNRK  720
RFPAQLLPDF VA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-16413471563Homeobox protein Meis2
3k2a_B1e-16413471563Homeobox protein Meis2
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2323520.0CU232352.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011021429.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_011021430.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_011021431.10.0PREDICTED: BEL1-like homeodomain protein 1
TrEMBLB9GHM60.0B9GHM6_POPTR; Uncharacterized protein
STRINGPOPTR_0001s22430.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16273492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-118BEL1-like homeodomain 1