PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG000506.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GRAS | ||||||||
Protein Properties | Length: 222aa MW: 25370.3 Da PI: 9.4529 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 43 | 7.2e-14 | 75 | 163 | 51 | 136 |
GRAS 51 arlarsvselykalppsetseknsseelaalkl....fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp 136 +r++r++s+ +++ +ets n e+++a +l f+e + +fsh++ +aI+e v + +r+ i+D++i GlQW ++qaLasR CCG000506.1 75 ERINRETSRAASKGYIKETS-FNIYEAMMAPSLsimaFYEQNSFSRFSHFAGIRAIVENVGETKRILILDLEIRTGLQWTLFMQALASRG 163 57777667766666666665.4555555555545566***************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 10.525 | 1 | 222 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.5E-11 | 75 | 163 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MRGLIEPKKE KQLPFSSASL ELLKNHADGL KQLNSERHLE PINDKLFTGV VKRELSTEEI 60 VRIAGERFIQ SSQTERINRE TSRAASKGYI KETSFNIYEA MMAPSLSIMA FYEQNSFSRF 120 SHFAGIRAIV ENVGETKRIL ILDLEIRTGL QWTLFMQALA SRGKRLMSFA QTMNLPFSFN 180 VVMVSDMRDL REDLELDSEG KKAVFSEFFL TSLIAPPNRL IP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002316032.1 | 3e-57 | DELLA protein RGL2 | ||||
TrEMBL | B9HWZ7 | 7e-56 | B9HWZ7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s15350.1 | 1e-56 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 9e-11 | RGA-like 2 |