PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG000251.1 | ||||||||
Common Name | DREB2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 287aa MW: 31739.8 Da PI: 4.8643 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.9 | 2.2e-17 | 78 | 128 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +g+WvAeIr+p r r +lg+f ta+eAa a+++a++ ++g CCG000251.1 78 CNYRGVRQRT-WGKWVAEIREPD----RgPRLWLGTFPTAYEAALAYDNAARTMYG 128 56*****999.**********82....34***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.49E-31 | 78 | 138 | No hit | No description |
Pfam | PF00847 | 4.4E-12 | 78 | 128 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.4E-30 | 79 | 137 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-20 | 79 | 137 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 7.2E-35 | 79 | 142 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.456 | 79 | 136 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-9 | 80 | 91 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-9 | 102 | 118 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MGTLIQGSNA TSMSMDSSKK RKRASNKSVA ETLQKWKEYN EYLDAQGDEG NKPVRKVPAK 60 GSKKGCMKGK GGPENSVCNY RGVRQRTWGK WVAEIREPDR GPRLWLGTFP TAYEAALAYD 120 NAARTMYGPR ARLNIPDVVN STSSSKDNFS AVTPSYYYSA ASPADSVTTS THSEVCAYED 180 PNQNVLSHAE DWMTNISSQA EVCEQNASSQ TEVYEQNVSS QHVEDCSRGV EKNSKLSQDE 240 LKIQPENPSW ANDCHDYGWD EIFSVEELLG DIDSGMTGAE GYFSLGF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-18 | 79 | 141 | 5 | 68 | ATERF1 |
3gcc_A | 1e-18 | 79 | 141 | 5 | 68 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00302 | DAP | Transfer from AT2G40340 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ337191 | 0.0 | DQ337191.1 Populus euphratica dehydration responsive element binding protein (DREB2) gene, complete cds. | |||
GenBank | EF137176 | 0.0 | EF137176.1 Populus euphratica dehydration responsive element binding protein (DREB2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011004133.1 | 0.0 | PREDICTED: dehydration-responsive element-binding protein 2C-like | ||||
Refseq | XP_011004213.1 | 0.0 | PREDICTED: dehydration-responsive element-binding protein 2C-like | ||||
TrEMBL | A1XCN0 | 0.0 | A1XCN0_POPEU; Dehydration responsive element binding protein | ||||
STRING | POPTR_0008s07360.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1175 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40340.1 | 3e-36 | ERF family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105110686 |
Publications ? help Back to Top | |||
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