PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CCG000229.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 250aa MW: 29000.9 Da PI: 9.2731 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 40.5 | 7e-13 | 20 | 103 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +L+ea ++ +l+rg+l++++W+ev++++ ++ g+ +++ +qCk++++ l+k+yk +k st+p++ +l+ CCG000229.2 20 CWSDGATGTLVEAWGDRYINLNRGNLRQKDWKEVADAVnnQQNGVkpKKTDIQCKNRIDTLKKKYKIEKSKPPP------STWPFYYRLD 103 7*************************************88666665578999**************99887775......5899999987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.7E-26 | 18 | 105 | No hit | No description |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 250 aa Download sequence Send to blast |
MDPSPSAAIT RPYHGGREDC WSDGATGTLV EAWGDRYINL NRGNLRQKDW KEVADAVNNQ 60 QNGVKPKKTD IQCKNRIDTL KKKYKIEKSK PPPSTWPFYY RLDSLLGTNS NATNTFKKPT 120 SVTFTVKSKT KPQNDVYPGL ASCGESSSDD DDDMAWVDER VKKKRPRMED VDLSDWAACR 180 ELARAILKFG EIYERIESSK QQQMMELEKQ RMELTKEVEF ERMNLFIDAQ LELKKKSFSR 240 DKFWKLFVFS |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 159 | 166 | RVKKKRPR |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00488 | DAP | Transfer from AT5G05550 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CU231227 | 1e-110 | CU231227.1 Populus EST from mild drought-stressed leaves. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011000834.1 | 0.0 | PREDICTED: trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A2K1ZD92 | 1e-163 | A0A2K1ZD92_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s07140.1 | 1e-164 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1887 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G05550.1 | 8e-68 | sequence-specific DNA binding transcription factors |