PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG000169.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 292aa    MW: 33046.3 Da    PI: 8.4495
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG000169.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding262.1e-082167347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                      WT+eE + + +a + +  +   +W ++a++++ g+t ++++  + k+
      CCG000169.1 21 EWTKEENKMFERALAIFDEHepdRWLKVAAMIP-GKTVNDVIKQYKKL 67
                     7**************99999999**********.*********99986 PP
2Myb_DNA-binding42.61.4e-13121165347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ +  ++G+g+W+ I+r +   +t+ q+ s+ qky
      CCG000169.1 121 PWTEEEHRRFLMGLLKHGKGDWRNISRNFVGSKTPTQVASHAQKY 165
                      8****************************999************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.7951770IPR017884SANT domain
SMARTSM007179.1E-91870IPR001005SANT/Myb domain
SuperFamilySSF466891.27E-112074IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.8E-42066IPR009057Homeodomain-like
PfamPF002492.9E-72167IPR001005SANT/Myb domain
CDDcd001675.16E-92167No hitNo description
PROSITE profilePS5129419.173114170IPR017930Myb domain
SuperFamilySSF466895.46E-17115170IPR009057Homeodomain-like
TIGRFAMsTIGR015577.6E-17117169IPR006447Myb domain, plants
SMARTSM007174.4E-11118168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-10118164IPR009057Homeodomain-like
CDDcd001671.21E-9121166No hitNo description
PfamPF002497.2E-11121165IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
METLYSSWCM SNPICVAQTT EWTKEENKMF ERALAIFDEH EPDRWLKVAA MIPGKTVNDV  60
IKQYKKLEED VCDIEAGRVP VPGYLSSSFT PELVDNSTFD AYRKRPLNIK SADQQRKKGV  120
PWTEEEHRRF LMGLLKHGKG DWRNISRNFV GSKTPTQVAS HAQKYFIRQQ LSGVKDKRRP  180
SIHDITTLNL GGSTSPSDGD KASSLDQSDV PLPQQKPSGM QKLLIDWDES KDGSVMTYGS  240
THGDLFESSP YEISSNGLTF QGQNLYAGAP HGARIKPRNM VFQLSHPRFQ IH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-15221101193RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00347DAPTransfer from AT3G11280Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011039696.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H73e-91DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLB9HHK80.0B9HHK8_POPTR; MYB family protein
STRINGPOPTR_0008s06450.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.22e-89MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]