PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG000023.2
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 363aa    MW: 41273.4 Da    PI: 5.1425
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG000023.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185.3e-0689112226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  k  lC ff + G+C  G +CkF+H+
  CCG000023.2  89 KSILCEFFKA-GQCAKGFKCKFSHD 112
                  6679**7777.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.1E-487113IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-687112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.15987114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-489113IPR000571Zinc finger, CCCH-type
SMARTSM003563.1157194IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.953157195IPR000571Zinc finger, CCCH-type
PfamPF165431.0E-18214293IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MPPKQSKADL AKKQKIVEDK TFGLKNKSKS KNVQKYVQNL QQAVQPKLDP SKIAAKKKKE  60
EEKAREKELN DLFKVAVSQP KVPVGVDPKS ILCEFFKAGQ CAKGFKCKFS HDLNVQRKGE  120
KIDIYSDKRD EDTMEDWDQE TLEKVVESKK TEYNQNKPTD IVCKYFLEAV EKKQYGWFWS  180
CPNGGKDCHY RHALPPGYVL KSQMKALLEE EADKISIEEE IENQRAKLTA STPMTPELFT  240
QWKTKKAEER EAGLAAKRAE RAKNDRMSGR ELFLSDSSVF VDDAEAYENY QRDEELVVTE  300
EKSKVNSAAV PSTSKRAVAD TEEDLPDEDE DDDELDMDEL NELEASLSKT SVQTHGPGIK  360
ASS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818967e-32LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132647e-32LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011000769.10.0PREDICTED: zinc finger CCCH domain-containing protein 11-like
SwissprotQ0JHZ20.0C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLA0A2K1ZBR50.0A0A2K1ZBR5_POPTR; Uncharacterized protein
STRINGPOPTR_0008s04540.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44191113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-157C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]