PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PEQU_42075 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 221aa MW: 26610.8 Da PI: 8.1993 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 62.7 | 8.6e-20 | 2 | 79 | 6 | 86 |
trihelix 6 evlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 e ++ + +r e+++++ ++k++k lWe++s+ m ++gf r+p+qCk+kw+nl +r+k + +++ s++ +py+++++ PEQU_42075 2 EPRVFLSIRAELDQSFAETKRNKRLWEAISSGMVSKGFYRTPEQCKSKWKNLLTRFKGSEVLGEEK---SRQAFPYYEEMK 79 67889****************************************************987776664...55679*****97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.737 | 1 | 54 | IPR017877 | Myb-like domain |
CDD | cd12203 | 1.28E-14 | 2 | 61 | No hit | No description |
Pfam | PF13837 | 4.2E-17 | 4 | 81 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0016592 | Cellular Component | mediator complex |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 221 aa Download sequence Send to blast |
XEPRVFLSIR AELDQSFAET KRNKRLWEAI SSGMVSKGFY RTPEQCKSKW KNLLTRFKGS 60 EVLGEEKSRQ AFPYYEEMKS ILSGRDQRLL SLEKEKEEEE MQEEEDEGRM TNKKKSKRAK 120 HGRGGGRVFE EVEWALKELA KWQKEREVRW LQVAEAREAE RQMAELEWKR MMEAICEERA 180 EMEKRWRERE DEWRSRQELR AERRDHIFAA IVARLGRDDG D |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020597787.1 | 1e-152 | trihelix transcription factor GT-3b | ||||
TrEMBL | A0A2I0WLK3 | 5e-71 | A0A2I0WLK3_9ASPA; Trihelix transcription factor GT-3b |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12595 | 31 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G38250.1 | 2e-31 | Trihelix family protein |