PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PEQU_41959 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 122aa MW: 14154.6 Da PI: 10.1084 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.8 | 1.3e-15 | 20 | 109 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ffkv++p + ++ l +p+kfa++++ + e+ t++d+ grsW + ++k++ + ++GW +Fvk ++ g f+vFk++g+++f +vkvf+ PEQU_41959 20 FFKVMLPGYLNE---LAIPRKFARNMSVERER--GATIRDPVGRSWHADV--EGKGEDlWFCGEGWMNFVKGLEIGLGFFLVFKYKGNMDF--NVKVFD 109 778886655554...67******777555444..58999***********..88888877889****************************..999997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.7E-19 | 15 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.476 | 17 | 111 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.3E-20 | 17 | 118 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.71E-13 | 19 | 109 | No hit | No description |
SMART | SM01019 | 5.2E-12 | 20 | 111 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-12 | 20 | 109 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 122 aa Download sequence Send to blast |
MAKVAMKKKK RKKKNGATHF FKVMLPGYLN ELAIPRKFAR NMSVERERGA TIRDPVGRSW 60 HADVEGKGED LWFCGEGWMN FVKGLEIGLG FFLVFKYKGN MDFNVKVFDL TACEVEYSHE 120 IW |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 6 | 11 | KKKKRK |
2 | 6 | 13 | KKKKRKKK |
3 | 7 | 13 | KKKRKKK |
4 | 8 | 12 | KKRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020594303.1 | 3e-86 | B3 domain-containing protein At3g18960-like | ||||
TrEMBL | A0A2I0W274 | 5e-61 | A0A2I0W274_9ASPA; B3 domain-containing protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16802 | 10 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G18960.1 | 1e-15 | B3 family protein |