PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_41543 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | GeBP | ||||||||
Protein Properties | Length: 390aa MW: 42655 Da PI: 4.9211 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 117.3 | 8.7e-37 | 95 | 193 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 lfqrlw++eDei++LqG+++f++++g+ +++ d+ fye++kk+++++++k+ql+eK+rrLKkK+++ v+++ sgk+++f+++h+q +fe+++kiW PEQU_41543 95 LFQRLWTDEDEITILQGFLEFTTQRGTthASHQyDTGPFYEQIKKQLQLEFNKNQLIEKLRRLKKKYRNVVNRMVSGKDFVFKSAHEQATFEIARKIWS 193 79************************98867778****************************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 8.8E-33 | 96 | 193 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MEDDLDDDEE EFPDLSPPQH SQPSSLPKDE PDSPITFLNP NPNHAVTPTR TAPQNGSIKA 60 VPISVSDIPP AHIVSAAEDS RRVVSATSVD DSRRLFQRLW TDEDEITILQ GFLEFTTQRG 120 TTHASHQYDT GPFYEQIKKQ LQLEFNKNQL IEKLRRLKKK YRNVVNRMVS GKDFVFKSAH 180 EQATFEIARK IWSASVKRGR DSEDDEFTPN PASSILEFDS GFGVGAAAGD GFLSSERKLS 240 RSSRKRIRMT NSEQEAAVAA AAAAANGVAV EVPIAAPLDP TSSVPIPIII EETVKSCLSP 300 LFKELLQSAM AGPQGGLIPG VGGIGGGGLL GMNPLQLGIG NLQGNLLVDE KWRNQNILEL 360 EVYLKRIELM RDQIKSTLEE LKSSTPSAGD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020597486.1 | 0.0 | probable transcription factor At3g04930 | ||||
Refseq | XP_020597487.1 | 0.0 | probable transcription factor At3g04930 | ||||
Refseq | XP_020597488.1 | 0.0 | probable transcription factor At3g04930 | ||||
Refseq | XP_020597490.1 | 0.0 | probable transcription factor At3g04930 | ||||
TrEMBL | A0A2I0W7H1 | 0.0 | A0A2I0W7H1_9ASPA; Mediator-associated protein 1 | ||||
STRING | XP_008807916.1 | 3e-97 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP974 | 37 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04930.2 | 1e-46 | DNA-binding storekeeper protein-related transcriptional regulator |