PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_41087

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

Protein Properties

Length: 135aa MW: 15763.6 Da PI: 10.3618

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_41087	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	43.9	4.2e-14	48	129	14	95
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 l +p +f+++h+++ ++ ++l d++grs v++ + k++r + ++ GW eF+ n+L +gD ++F+ ++++ + v+ PEQU_41087 48 PYLNIPFRFLTSHKLERKS--RVILIDPKGRSSLVRI--TIKKRRpiiqCCFSMGWHEFCLRNHLSAGDKCIFEIKSEQADAYIVH 129 5689*******988444..7***********..55555544789999*******************877655445555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	9.8E-20	32	134	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.20E-13	33	117	No hit	No description
SuperFamily	SSF101936	7.46E-17	33	134	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	10.221	35	135	IPR003340	B3 DNA binding domain
SMART	SM01019	0.0059	35	134	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.8E-11	46	129	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence Send to blast
MLEASSPLNK QEESKASKTA EKLFKQFCKS LGPHFCITLK FCNLRSRPYL NIPFRFLTSH 60 KLERKSRVIL IDPKGRSSLV RITIKKRRPI IQCCFSMGWH EFCLRNHLSA GDKCIFEIKS 120 EQADAYIVHV HIIRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020595094.1	1e-95	B3 domain-containing protein Os03g0212300-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4748	32	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G32460.1	2e-06	B3 family protein