PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_40176 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | GRAS | ||||||||
Protein Properties | Length: 135aa MW: 15346 Da PI: 6.2647 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 83.7 | 3.2e-26 | 1 | 120 | 199 | 317 |
GRAS 199 gEalaVnlvlqlhrlldesvs..leserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295 gEal++n++++ hr++des++ + s+r+ + k+++sl+P +vv+v++ead ++++ ++r+ a++y++ fd++e+ l+ seer+ +E + + ++i+ PEQU_40176 1 GEALVINCHMMPHRIPDESAAggMISPRTMFAKALRSLEPSLVVIVDEEADFTASDVVTRLRAAFNYMWIPFDAVETFLAVGSEERRRYEGA-VCWRIE 98 7****************997633667*****************************************************************9.999*** PP GRAS 296 nvvacegaerrerhetlekWre 317 nv+a eg++r+er e+ ++W+ PEQU_40176 99 NVIAEEGEQRVERLERRGRWHX 120 ********************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 14.151 | 1 | 135 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-23 | 1 | 120 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
GEALVINCHM MPHRIPDESA AGGMISPRTM FAKALRSLEP SLVVIVDEEA DFTASDVVTR 60 LRAAFNYMWI PFDAVETFLA VGSEERRRYE GAVCWRIENV IAEEGEQRVE RLERRGRWHX 120 XSGRLCWTSI RRGGG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020679482.1 | 8e-67 | scarecrow-like protein 32 | ||||
Swissprot | Q2V2T9 | 2e-42 | SCL16_ARATH; Putative scarecrow-like protein 16 | ||||
TrEMBL | A0A2I0VR92 | 2e-65 | A0A2I0VR92_9ASPA; Scarecrow-like protein 32 | ||||
STRING | GSMUA_Achr10P11390_001 | 2e-49 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5697 | 37 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67411.1 | 6e-45 | GRAS family protein |