PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_39722 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | GeBP | ||||||||
Protein Properties | Length: 248aa MW: 27019.8 Da PI: 11.0086 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 43.2 | 1.1e-13 | 2 | 53 | 46 | 97 |
DUF573 46 sfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 s +++sql+eK+rrL+kK++++ ++++g++ps ++hd++ ++ls ++W+ PEQU_39722 2 SQPYTRSQLSEKLRRLRKKYRTMAGRIARGQDPSRLSQHDRDLLHLSTRLWD 53 667899*********************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 6.7E-13 | 2 | 53 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MSQPYTRSQL SEKLRRLRKK YRTMAGRIAR GQDPSRLSQH DRDLLHLSTR LWDPSNASTS 60 PFSAPDAVAA GSAGNKRRRP NPRAPTSRAR ASSSPHQVIV ALESALLPPP NPPLALPSTS 120 PVAYKKECMD PLPSIGHNGS IDGANFAASP EEIPKNKLPT PPISSSVDPK RSGAKHLAIK 180 SVLDVLDVAL NEVRSTLANQ GIISSNGTSE QGLEMKGMSK RWQAHRLAEL DLLAQRWRLV 240 VEEKATQI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020594920.1 | 1e-177 | probable transcription factor At3g04930, partial | ||||
TrEMBL | A0A2I0XHN8 | 1e-129 | A0A2I0XHN8_9ASPA; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8695 | 32 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04930.2 | 7e-08 | DNA-binding storekeeper protein-related transcriptional regulator |