PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_38460

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

M-type_MADS

Protein Properties

Length: 428aa MW: 49263.1 Da PI: 4.4969

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_38460	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	22.8	1.2e-07	23	59	7	43
HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 7 snrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 + r t+ R +g+ KK eE+S LC++ ++v s++ PEQU_38460 23 RARRSTYMTRWKGLKKKTEEISLLCGVPALVAARSPE 59 56889**********************9999777765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	13.302	9	69	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.8E-5	9	68	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.76E-13	9	85	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.9E-6	22	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence Send to blast
GERRTAGAMG RAKLPIKYRE QVRARRSTYM TRWKGLKKKT EEISLLCGVP ALVAARSPEF 60 NTVEFWPEKG TPEFHRIRER YLCLHKKRNN SDDKGDEGSG NSAEQIPCLP MSSSCVSTTL 120 FHEEMVAMEI KLKEIRERLQ FFQADSHTEN LADHFPGEEE QHLASYTVSI PLQQDHLSYD 180 QLPPDFATFL QADSHSENLA RHFPFPGEEE QHLASYTVSI PLQQDHLSYD QLPPDFATFN 240 MFLQQDENLA RHFPFPGEEE QHLAPYAVST PLQHYHLSYD QLTPDFATSN MFLQQNDLPM 300 INLEEISPPA PPLPPADQYV PPADQYYPCV EYILPDHAGF DMILQHDILY PFEQPAAFVE 360 QPTPFDESLH HFADFSTDDP SVGMLPSDSP MWSNLDDWTW SDSVFLDLEY VLLYRYSLCC 420 FSLYTTIV

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence Send to blast

GERRTAGAMG RAKLPIKYRE QVRARRSTYM TRWKGLKKKT EEISLLCGVP ALVAARSPEF  60
NTVEFWPEKG TPEFHRIRER YLCLHKKRNN SDDKGDEGSG NSAEQIPCLP MSSSCVSTTL  120
FHEEMVAMEI KLKEIRERLQ FFQADSHTEN LADHFPGEEE QHLASYTVSI PLQQDHLSYD  180
QLPPDFATFL QADSHSENLA RHFPFPGEEE QHLASYTVSI PLQQDHLSYD QLPPDFATFN  240
MFLQQDENLA RHFPFPGEEE QHLAPYAVST PLQHYHLSYD QLTPDFATSN MFLQQNDLPM  300
INLEEISPPA PPLPPADQYV PPADQYYPCV EYILPDHAGF DMILQHDILY PFEQPAAFVE  360
QPTPFDESLH HFADFSTDDP SVGMLPSDSP MWSNLDDWTW SDSVFLDLEY VLLYRYSLCC  420
FSLYTTIV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020599766.1	0.0	uncharacterized protein LOC110039147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26320.1	6e-09	AGAMOUS-like 33