PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_36240
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family ARF
Protein Properties Length: 717aa    MW: 78786 Da    PI: 8.0043
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_36240genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.62.7e-24116217199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+lt sd++++g +++p++ ae++       +  ++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F +    ++el
  PEQU_36240 116 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyrQ--QRPSQELIAKDLHGVEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLR--GGNGEL 210
                 99****************************9743..345679************************************************4..378889 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +++++r+
  PEQU_36240 211 RLGIRRA 217
                 ****997 PP
2Auxin_resp114.87.5e-38245325282
  Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                 a+a+stk++F + YnPra +seF+v+++k++k+++ ++svG+Rfkm+fe+ed++err++G++++vsdldp++Wp+SkWr+L
  PEQU_36240 245 ANAMSTKKMFPINYNPRANQSEFIVPYWKFRKSCSYSISVGTRFKMRFESEDAAERRCTGLITAVSDLDPIQWPGSKWRCL 325
                 789*****************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.4E-41108222IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.19E-42113241IPR015300DNA-binding pseudobarrel domain
CDDcd100172.64E-23114216No hitNo description
PfamPF023623.4E-22116217IPR003340B3 DNA binding domain
PROSITE profilePS5086313.592116218IPR003340B3 DNA binding domain
SMARTSM010195.6E-25116218IPR003340B3 DNA binding domain
PfamPF065071.5E-32245325IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MCLELWHACA GPRISLPRKG SLVVYLPQGH LEHLAGGQRS AGGGMLIRYD VPPHVFCRVV  60
EVQLRVHAAT DEVYAQLSMI AENEAFEKQI QGGVEGEGEE VDEMDGGDQS PVPHMFCKTL  120
TASDTSTHGG FSVPRRAAED CFPPLDYRQQ RPSQELIAKD LHGVEWRFRH IYRGQPRRHL  180
LTTGWSAFVN KKKLVSGDAV LFLRGGNGEL RLGIRRASQI KGNIAHNISG SQNLNVGPGS  240
LASLANAMST KKMFPINYNP RANQSEFIVP YWKFRKSCSY SISVGTRFKM RFESEDAAER  300
RCTGLITAVS DLDPIQWPGS KWRCLVVRWD EDDVDNSLHN RVSPWEVEPT GSVSCPNSLL  360
ASGSKRTRIS IPSISADYPH PSGSGYQSLR ESARFQEVLQ GQEIFGFKSP YNGGDATLPH  420
LSEMRSHHLP EMRRCIANPN SCSLAGSGGN ARVPPGNSDF HFQGTGFGES MRFHKVLQGQ  480
EIVPVLPSFR GLAVESHREN DGSKIFESYS AGRCSAPPLQ GYCTFIQPCT TAAQVSSPSS  540
VLMFQQAASQ LPCTYSLYDT NEKEKADDSN LSAPISSAEG TRVQPASFTT RCENLTRFKA  600
PVHKNGQSII HGSGSSCRLF GFPLTEKIPV TNVVASSLNE SPLIEPSIKS SFPSQRPQIP  660
TNNPGHGCTR VSVFYLSVAT FWNSLDFSSL LHHEGFSVPY LLQAGLLISR SLLDMPI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-109135419359Auxin response factor 1
4ldw_A1e-109135419359Auxin response factor 1
4ldw_B1e-109135419359Auxin response factor 1
4ldx_A1e-109135419359Auxin response factor 1
4ldx_B1e-109135419359Auxin response factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00021PBMTransfer from AT2G33860Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020595811.10.0auxin response factor 3-like isoform X2
RefseqXP_020595812.10.0auxin response factor 3-like isoform X2
TrEMBLA0A2I0AU810.0A0A2I0AU81_9ASPA; Auxin response factor
STRINGXP_008798266.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25373580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-177ARF family protein