PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_36063
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family bHLH
Protein Properties Length: 247aa    MW: 27033.7 Da    PI: 7.9133
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_36063genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.42.6e-1357108155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +r++h  +Er+RR+ +N+ ++ Lr+l+P++     ++ + a+i   A+++Ik+L+
  PEQU_36063  57 QRMTHIVVERNRRRLMNEHLAALRSLMPSS---FVQRGDQASIIGGAIDFIKELE 108
                 79***************************9...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.108.2E-1455110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-1555121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.21E-1355111No hitNo description
PROSITE profilePS5088815.21856107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-1057108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-1062113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MESKRLSCAT TALESVFHGG NRDGKDSSFL PAAVERKKRK RMAAKNGCSG MGEAESQRMT  60
HIVVERNRRR LMNEHLAALR SLMPSSFVQR GDQASIIGGA IDFIKELEQM LLSFQAEKSS  120
RSSPASVEDG WSPAAATVSS FFVSPQYTGF SSRLQRGDED QECEVDVEVT AVQGHVNLKV  180
AGRRRPGQIV RAVAAMEELR LTVLHLSITS LDAVSVLYSL NLKKEEDCRL GSADDIASAV  240
HQIFSTC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13540RKKRKR
25768RMTHIVVERNRR
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020593177.10.0transcription factor bHLH57-like isoform X1
RefseqXP_020593178.10.0transcription factor bHLH57-like isoform X1
RefseqXP_020593179.10.0transcription factor bHLH57-like isoform X1
RefseqXP_020593180.10.0transcription factor bHLH57-like isoform X2
SwissprotQ9M1283e-58BH057_ARATH; Transcription factor bHLH57
TrEMBLA0A2I0VTX51e-129A0A2I0VTX5_9ASPA; Transcription factor bHLH70
STRINGGSMUA_Achr11P02740_0011e-84(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79573344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01460.11e-57bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]