PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_34544 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 192aa MW: 22564.1 Da PI: 10.2105 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.1 | 2e-27 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n +nrqvtfskRrng+lKKA EL vLCdae+ +iifsstgkly++ s PEQU_34544 10 RIDNITNRQVTFSKRRNGLLKKARELAVLCDAEIGLIIFSSTGKLYDFTS 59 8**********************************************975 PP | |||||||
2 | K-box | 77 | 5.1e-26 | 81 | 170 | 9 | 98 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++++ + +q+e++ L+++++nLq+++R+l+Ged++ Ls+keLq+Le+qLe+sl i +kK+++l+++++el +k +++e+++L k+l PEQU_34544 81 HANSELKIWQREATSLRQQLHNLQEKHRQLMGEDINGLSIKELQNLENQLETSLHAIQQKKEQILINEVQELNQKIALMHREKMELCKML 170 6788999*****************************************************************************998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.4E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.884 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.12E-44 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 2.35E-33 | 2 | 91 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.1E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.5E-24 | 84 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.544 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008134 | Molecular Function | transcription factor binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MGRGKIEIRR IDNITNRQVT FSKRRNGLLK KARELAVLCD AEIGLIIFSS TGKLYDFTSS 60 SMKTVINRYN KAKQDHLQTM HANSELKIWQ REATSLRQQL HNLQEKHRQL MGEDINGLSI 120 KELQNLENQL ETSLHAIQQK KEQILINEVQ ELNQKIALMH REKMELCKML NLCRQENMEL 180 NKKVFIKDQT NH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 6e-22 | 1 | 76 | 1 | 76 | MEF2C |
5f28_B | 6e-22 | 1 | 76 | 1 | 76 | MEF2C |
5f28_C | 6e-22 | 1 | 76 | 1 | 76 | MEF2C |
5f28_D | 6e-22 | 1 | 76 | 1 | 76 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020572217.1 | 1e-130 | MADS-box transcription factor 23-like isoform X1 | ||||
Refseq | XP_020572218.1 | 1e-130 | MADS-box transcription factor 23-like isoform X2 | ||||
Swissprot | Q6EP49 | 7e-90 | MAD27_ORYSJ; MADS-box transcription factor 27 | ||||
TrEMBL | A0A2I0WUR8 | 1e-111 | A0A2I0WUR8_9ASPA; MADS-box transcription factor 27 | ||||
STRING | XP_008800745.1 | 2e-92 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP614 | 35 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 2e-83 | AGAMOUS-like 21 |
Publications ? help Back to Top | |||
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