PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_34212
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB_related
Protein Properties Length: 358aa    MW: 39616.2 Da    PI: 7.1426
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_34212genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.31.8e-1386130147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
       PEQU_34212  86 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 130
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-1680136IPR009057Homeodomain-like
PROSITE profilePS5129415.40881135IPR017930Myb domain
TIGRFAMsTIGR015571.7E-1884133IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.3E-684136IPR009057Homeodomain-like
SMARTSM007175.3E-1185133IPR001005SANT/Myb domain
PfamPF002493.1E-1186130IPR001005SANT/Myb domain
CDDcd001672.43E-888131No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MLSSTPAAEE GGSEFGGQVG FCADSHHQQQ QQQQQQQQQK KGIGIPAGMA FQDMLGSITT  60
SAAADETSSE DPNKKIRKPY TITKSRESWT EQEHDKFLEA LQLFDRDWKK IEAFVGSKTV  120
IQIRSHAQKY FLKVQKNGTS EHVPPPRPKR KAAHPYPQKA SKNGHQVSQP TTSFQNAPCL  180
PEPGYPLKSD RSSVIRNSTS GTISSWVPVQ PTDALHTIKE DAGPSGSVLF NNSSSCSSTE  240
NPQMTRQNCE TADQRHHDAS VRDMPDFAQV YSFIGSIFDP SRRGHLQKLM EMDPIDVETV  300
LLLMGNLSLN LTNPDFEDHR RLLSLYDACA EKGKASSSQG MLKAGETLNT PFLVKAEQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020598589.10.0protein REVEILLE 8-like isoform X1
SwissprotQ8H0W38e-98RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A221C7090.0A0A221C709_9ASPA; Protein REVEILLE 3
STRINGXP_008796928.11e-131(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.21e-75MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]