PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_34075 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | MYB_related | ||||||||
Protein Properties | Length: 88aa MW: 10107.7 Da PI: 9.7213 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.4 | 7e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grWT eEde+lv+++++ G g+W++ ++ g+ R++k+c++rw +yl PEQU_34075 14 KGRWTMEEDEILVNYIAENGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.78 | 9 | 65 | IPR017930 | Myb domain |
SMART | SM00717 | 2.5E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.3E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.12E-21 | 15 | 88 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.99E-9 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-7 | 65 | 88 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 7.03 | 66 | 88 | IPR017930 | Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 88 aa Download sequence Send to blast |
MGRAPCCDKK GLKKGRWTME EDEILVNYIA ENGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRSDLKRGSI SKEEEEIIIK LHSTIGNR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor postulated to regulate the biosynthetic pathway of a flavonoid-derived pigment in certain floral tissues. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020593967.1 | 1e-57 | myb-related protein P-like | ||||
Refseq | XP_020596073.1 | 3e-56 | myb-related protein P-like | ||||
Swissprot | P27898 | 9e-49 | MYBP_MAIZE; Myb-related protein P | ||||
TrEMBL | A0A096PZZ6 | 3e-49 | A0A096PZZ6_MAIZE; MYB-related transcription factor (Fragment) | ||||
TrEMBL | A0A317Y7V1 | 3e-49 | A0A317Y7V1_MAIZE; Myb-related protein P | ||||
TrEMBL | C5WMJ0 | 4e-49 | C5WMJ0_SORBI; Uncharacterized protein | ||||
STRING | Sb01g037670.1 | 8e-50 | (Sorghum bicolor) | ||||
STRING | GRMZM2G016020_P01 | 5e-50 | (Zea mays) | ||||
STRING | GRMZM2G129872_P01 | 5e-50 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47460.1 | 1e-41 | myb domain protein 12 |