PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_33912
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family bHLH
Protein Properties Length: 543aa    MW: 59741.8 Da    PI: 6.7982
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_33912genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.7e-13393439455
                 HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  PEQU_33912 393 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITELQ 439
                 799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.3E-4834212IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.85389438IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.64E-18392451IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.63E-14392443No hitNo description
Gene3DG3DSA:4.10.280.102.3E-17393450IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-10393439IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-17395444IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MAIAVLGIQA FDYLTKSHLS SDGLITTVGG EANLQNKLVD LVEGPSGAVW SFAIFWQISR  60
SKSGDVVLGW GDGHLREPRE GEVAHEALPA AGQAAHQNMM KRVLQKLHLV YGGSDDENYA  120
LGLDRVTDAE MFFLASMYFA FPRGEGAPGR VLLSGNHLWA SANNYCVRAF LATAAGFQTI  180
VLVPFDTGVL ELGSVNAIKE SFEGLQMIRS LFSQGSTSHG GEKKVEKVQN SHFGFLGRSE  240
QSPMIFGKDL NIGRLEFSTG KIEDRQLEIH QSNNGLATYR KCLSWTQGRC FGSPQHKLGS  300
GAIIVGGSDQ HNGTKDERRL QFQPQKPPPP PPPTKQIDFS AVGGSVVARL GVLDAELSDA  360
EASCKEEKPS IIDERRPRKR GRKPANGREE PLNHVEAERQ RREKLNQRFY ALRAVVPNIS  420
KMDKASLLGD AIAYITELQK KVKEIDSEKD PCLIDRKNWT PDVDVQTSHE EVILSVSCPI  480
EAHPVSRIFQ ALKETRVSVL ESKVSAVDDD TILHTFVLKS PAGAEQMMKE ELMRAISQEM  540
SLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-30387449264Transcription factor MYC2
5gnj_B6e-30387449264Transcription factor MYC2
5gnj_E6e-30387449264Transcription factor MYC2
5gnj_F6e-30387449264Transcription factor MYC2
5gnj_G6e-30387449264Transcription factor MYC2
5gnj_I6e-30387449264Transcription factor MYC2
5gnj_M6e-30387449264Transcription factor MYC2
5gnj_N6e-30387449264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1374382RRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020590891.10.0transcription factor bHLH13-like
RefseqXP_020590892.10.0transcription factor bHLH13-like
RefseqXP_020590893.10.0transcription factor bHLH13-like
SwissprotA0A3Q7ELQ21e-172MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A2I0W4090.0A0A2I0W409_9ASPA; Transcription factor ABA-INDUCIBLE bHLH-TYPE
STRINGXP_010242395.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.11e-132ABA-inducible BHLH-type transcription factor
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]