PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_33116 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | HB-other | ||||||||
Protein Properties | Length: 230aa MW: 25941.9 Da PI: 7.919 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 35.5 | 1.8e-11 | 1 | 40 | 18 | 57 |
HHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 18 lFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 lF +++yp++ ++ e ++k+gL+e+qV+ WF+ rR k+kk PEQU_33116 1 LFPEHKYPTEVMKLEFSEKIGLSEKQVSGWFCHRRLKDKK 40 5899**********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00046 | 4.9E-9 | 1 | 40 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 13.005 | 1 | 41 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.68E-10 | 2 | 47 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.7E-12 | 2 | 40 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.72E-8 | 2 | 41 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
LFPEHKYPTE VMKLEFSEKI GLSEKQVSGW FCHRRLKDKK TLQGEICTNG KQNLSSSAVH 60 DRISGVKQES CSSTKQVDRN LDFKEVESKM YYGYRPCSDV LAYETSNKHP RTGIDHVAED 120 RSSGSSSASQ GSYLESHENP YVVQASGYKL CNDSGILMSN KNRVMKSNEN MGKPRHSFMR 180 VENDTPAISE LKWKLGSHYR EDGPLLGFEF DPIPPGAFDS PTRDSKFGNT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020598808.1 | 1e-167 | homeobox-DDT domain protein RLT1 isoform X3 | ||||
TrEMBL | A0A2I0WL68 | 1e-116 | A0A2I0WL68_9ASPA; Uncharacterized protein | ||||
STRING | XP_008782006.1 | 2e-66 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP25496 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03250.1 | 9e-36 | HB-other family protein |