PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_30270 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | NF-YC | ||||||||
Protein Properties | Length: 152aa MW: 16686.2 Da PI: 7.2677 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 60.3 | 4.1e-19 | 31 | 112 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavt.rtdifdflvdivpr 98 ++P r+k+i++ d d++++s+ea ++s elfi l+ rsw+ a e++r+t+k d+ +a++ ++ + dfl d p+ PEQU_30270 31 TPSFPTGRVKRIMRLDADINKVSSEAVLMISLCSELFIEFLAERSWNAAAEKRRKTIKLEDLRKAIKgHSPTADFLFDCLPK 112 5689**************************************************************846889******9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 5.09E-20 | 32 | 125 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.3E-19 | 33 | 96 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.4E-21 | 34 | 112 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MAAVGELIPA NQSLSDAEDN GEPEPVAGVL TPSFPTGRVK RIMRLDADIN KVSSEAVLMI 60 SLCSELFIEF LAERSWNAAA EKRRKTIKLE DLRKAIKGHS PTADFLFDCL PKISKLPTPQ 120 TVKRSDPEKP LPAGVRRIDA FFSSKTPEEI AP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020581843.1 | 1e-106 | nuclear transcription factor Y subunit C-9 | ||||
TrEMBL | A0A2I0VRN2 | 1e-61 | A0A2I0VRN2_9ASPA; Nuclear transcription factor Y subunit C-3 | ||||
STRING | evm.model.supercontig_43.48 | 8e-38 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13342 | 26 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43250.1 | 2e-37 | nuclear factor Y, subunit C13 |