PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_29826 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | MYB | ||||||||
Protein Properties | Length: 250aa MW: 28494.3 Da PI: 9.7247 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.2 | 1.6e-17 | 17 | 62 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+++G+ +W+tIa++++ gR++k+c++rw++ PEQU_29826 17 RGHWRPGEDEKLRQLVEEFGPQNWNTIAEKLQ-GRSGKSCRLRWFNQ 62 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 59.7 | 6.2e-19 | 69 | 112 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l+ a++ +G++ W+ Iar ++ gRt++ +k++w+ PEQU_29826 69 RRPFTEEEEERLLAAHRIHGNK-WAMIARLFP-GRTDNAVKNHWHV 112 679*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.978 | 12 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.39E-29 | 16 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-13 | 16 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-16 | 17 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.9E-27 | 18 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.45E-12 | 20 | 61 | No hit | No description |
PROSITE profile | PS51294 | 27.663 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 9.9E-16 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-15 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-21 | 71 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.88E-7 | 80 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MENLDAVKPE EMKACPRGHW RPGEDEKLRQ LVEEFGPQNW NTIAEKLQGR SGKSCRLRWF 60 NQLDPRINRR PFTEEEEERL LAAHRIHGNK WAMIARLFPG RTDNAVKNHW HVIMARRQRE 120 KSKFLCKNNS SSETWPPAFS NFSLTSERRI KYGILESTHY IKMPFLSFCN AYRACSISGG 180 FGGGSGSENG SGIMRSMNDV LRIGCGSKKA IFSVSNGRGG VQFPEKSNDE GSFRREDVPY 240 IDFLGVGKDC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-31 | 17 | 117 | 7 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020575382.1 | 0.0 | transcriptional activator Myb-like | ||||
Swissprot | Q9SEZ4 | 2e-64 | MY105_ARATH; Transcription factor MYB105 | ||||
TrEMBL | A0A2I0XB60 | 1e-124 | A0A2I0XB60_9ASPA; Transcription factor MYB44 | ||||
STRING | XP_008810902.1 | 6e-73 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17950.1 | 7e-64 | myb domain protein 52 |
Publications ? help Back to Top | |||
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