PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_25623
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family SBP
Protein Properties Length: 264aa    MW: 28956.2 Da    PI: 10.3005
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_25623genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.52.8e-4144120177
                 --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
         SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                 +Cq+egC adl++ak+yhrrhkvCe+hska+ v+++gl+qrfCqqCsrfh lsefD++krsCr+rLa+hn+rrrk+q
  PEQU_25623  44 RCQAEGCGADLTHAKHYHRRHKVCEFHSKASIVIAAGLSQRFCQQCSRFHVLSEFDQGKRSCRKRLADHNRRRRKSQ 120
                 6**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.9E-3242106IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.07742119IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.2E-3843121IPR004333Transcription factor, SBP-box
PfamPF031101.2E-3045118IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MPSAVTAPAR IGLNLGVRTY FSSASPEEEM GIGRVCRRRV RLARCQAEGC GADLTHAKHY  60
HRRHKVCEFH SKASIVIAAG LSQRFCQQCS RFHVLSEFDQ GKRSCRKRLA DHNRRRRKSQ  120
DLATINNINN NNNDNNNNNN KSTVATANNN NNNAALLHFE SSSSSNNNNT MANMGSSMDK  180
RNPETGSAIT RVPSPAMALG LNCSAMTVSP ALAGLSGSST TTVSSPPRVS FFSHLGDFRG  240
HEHRFLSWDD GDDSCSIRSP YQSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-3042118884squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020589290.10.0squamosa promoter-binding-like protein 13
TrEMBLM9QZ801e-124M9QZ80_9ASPA; SQUAMOSA promoter-binding-like 15
STRINGXP_008802805.11e-84(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1946357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.14e-48squamosa promoter binding protein-like 8