PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_24582 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | ERF | ||||||||
Protein Properties | Length: 295aa MW: 32766.6 Da PI: 5.2626 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.9 | 2.6e-18 | 106 | 156 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+++AeIrdp+ r r++lg+f taeeAak ++ a+ +l+g PEQU_24582 106 PRFRGVRRRP-WGKFAAEIRDPT----RrIRVWLGTFNTAEEAAKVYDSAAIQLRG 156 689*******.**********84....34*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.53E-30 | 106 | 163 | No hit | No description |
Pfam | PF00847 | 6.2E-12 | 106 | 156 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.103 | 107 | 164 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.48E-20 | 107 | 164 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 8.3E-29 | 107 | 164 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.8E-35 | 107 | 170 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-9 | 108 | 119 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-9 | 130 | 146 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MEEQRSDPIK RTVHIDVTSR PLNTTNLRSQ TVRIFCEDID ATDSSDDDCC FSRRRVKRYV 60 REIKFELQPS TATCSAKIKS GKSCAGQRKK KVAAALKKPQ PMPAIPRFRG VRRRPWGKFA 120 AEIRDPTRRI RVWLGTFNTA EEAAKVYDSA AIQLRGPDAT TNFSPPPPAT NHSISVGYES 180 SEDSHNTSSP TSVLRGFPSN TVAEAEAGLP EFGGDLNLFD EMPFYSENLD LGVYEQRVFN 240 NWSAEFGLFA GELQISDGGY EIGSSLHQDG DDFFEDITDL FPLDPLPAAV TSGIF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-18 | 107 | 163 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00456 | DAP | Transfer from AT4G27950 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020589170.1 | 0.0 | ethylene-responsive transcription factor CRF4-like | ||||
Refseq | XP_020589171.1 | 0.0 | ethylene-responsive transcription factor CRF4-like | ||||
TrEMBL | A0A2I0XAG5 | 1e-153 | A0A2I0XAG5_9ASPA; Ethylene-responsive transcription factor CRF4 | ||||
STRING | XP_008781621.1 | 2e-74 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1690 | 36 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 3e-34 | cytokinin response factor 4 |