PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_23940 | ||||||||
Common Name | MYB4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | MYB | ||||||||
Protein Properties | Length: 211aa MW: 23805.2 Da PI: 9.3879 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.4 | 5e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l+ ++ +G g W++ ++ g+ R++k+c++rw +yl PEQU_23940 14 KGAWTKEEDERLISHIRSHGEGAWRSLPQAAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 54.9 | 2e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T +Ed+l+++++ +lG++ W++Ia +++ gRt++++k++w+++ PEQU_23940 67 RGNFTHDEDDLIINLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.67 | 9 | 61 | IPR017930 | Myb domain |
SMART | SM00717 | 6.4E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.33E-29 | 13 | 108 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.5E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.11E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 27.3 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.7E-27 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.1E-16 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.12E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MGRSPCCEKA HTNKGAWTKE EDERLISHIR SHGEGAWRSL PQAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF THDEDDLIIN LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIRRKLLNRG 120 IDPATHRPIS AVDFSGGGGG AAAEKRSSRG KGDRVKVARL PRCPDLNLEL CISAPLEEMQ 180 HDLLVEESNC GGEFLRLGSS FLIDYRRLEM K |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-29 | 13 | 116 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that regulates negatively genes involved in anthocyanin biosynthesis. {ECO:0000269|PubMed:7920701}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF769469 | 0.0 | KF769469.1 Phalaenopsis equestris MYB transcription factor 4 (MYB4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020585535.1 | 1e-154 | myb-related protein Zm38-like | ||||
Swissprot | P20025 | 2e-92 | MYB38_MAIZE; Myb-related protein Zm38 | ||||
TrEMBL | A0A096ZX65 | 1e-152 | A0A096ZX65_PHAEQ; MYB transcription factor 4 | ||||
STRING | GLYMA11G11450.1 | 4e-94 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 2e-87 | myb domain protein 4 |
Publications ? help Back to Top | |||
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