PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_22787
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family B3
Protein Properties Length: 284aa    MW: 32495.3 Da    PI: 10.0825
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_22787genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.13.3e-18134220195
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                 f+k +++s+v++  +l lp kf+++h   + ++++++lede+g++ e  +i r+++    l++GW++F+ +++L++gD +vFkl++ ++f  ++ 
  PEQU_22787 134 FVKSMLRSHVSSCFWLGLPTKFCRDHL--PLCETKMILEDEEGEEHEAVYIGRRTG----LSGGWRSFAVDHKLEDGDALVFKLIELTRF--KIY 220
                 89************************5..457889***************544444....***********************9976776..444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.2E-21126223IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-23128222IPR015300DNA-binding pseudobarrel domain
CDDcd100173.68E-22132223No hitNo description
PfamPF023621.1E-16134220IPR003340B3 DNA binding domain
SMARTSM010193.7E-25134225IPR003340B3 DNA binding domain
PROSITE profilePS5086311.942134225IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MEASIHSYED IRRKIIEKNL QQLEDLGIAR ISKSLLEVGK RESKQLKIHS SFKAKKLLET  60
SELRRSSRKL KEAPSYCNDV VNSGKRRINC RRSCKSETVR REYTGRIASH EEKVLALKRG  120
EMLLTQVSSD HPSFVKSMLR SHVSSCFWLG LPTKFCRDHL PLCETKMILE DEEGEEHEAV  180
YIGRRTGLSG GWRSFAVDHK LEDGDALVFK LIELTRFKIY IVKAIVGSTQ AKDRKALSIE  240
SKETEDSSCE NQSSHITIQA PMSKPEDLPR NARKRKQSKP RPAN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020591625.10.0B3 domain-containing protein Os05g0481400-like isoform X1
SwissprotQ5KQI42e-70Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBLA0A2I0WQZ61e-163A0A2I0WQZ6_9ASPA; B3 domain-containing protein
STRINGXP_008803014.12e-88(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113703339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.11e-52B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]